| Sequence ID | dm3.chrX |
|---|---|
| Location | 16,958,936 – 16,959,046 |
| Length | 110 |
| Max. P | 0.950677 |
| Location | 16,958,936 – 16,959,046 |
|---|---|
| Length | 110 |
| Sequences | 4 |
| Columns | 127 |
| Reading direction | reverse |
| Mean pairwise identity | 76.08 |
| Shannon entropy | 0.34258 |
| G+C content | 0.32457 |
| Mean single sequence MFE | -13.21 |
| Consensus MFE | -8.82 |
| Energy contribution | -9.32 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.23 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.56 |
| SVM RNA-class probability | 0.950677 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 16958936 110 - 22422827 -----------------UUAAAUUAAUAAAACUUACUCGUCGCCUUCUCCACACAUUUAUUUAGUUGAUUAAGUCCCCAAUCAAUUGAAUUCCCUAGUAAGCCUAAGAAAACCAAAAAAUCCAAAAA -----------------..............((((((.((.(......).))......((((((((((((........)))))))))))).....)))))).......................... ( -11.10, z-score = -2.23, R) >droSim1.chrX 13136957 96 - 17042790 -----------------UUAAAUUAAUAAAACUUACUCGUGGUUUCCCUCACACAUUUAUUUAGUUGAUUAAGUCCCCAAUCAAUUGAAUUCCC----ACGCCCAA-AAACCCAAAAA--------- -----------------....................(((((................((((((((((((........))))))))))))..))----))).....-...........--------- ( -12.77, z-score = -2.63, R) >droSec1.super_17 792474 97 - 1527944 -----------------UUAAAUUAAUAAAACUUAAUCGCGGUUUCCCUCACACAUUUAUUUAGUUGAUUAAGUCCCCAAUCAAUUGAAUUCCC----AUGCCCAAAAAACCCAAAAA--------- -----------------.....................(.(((((.............((((((((((((........))))))))))))....----.........)))))).....--------- ( -12.97, z-score = -2.98, R) >droEre2.scaffold_4690 7312076 113 - 18748788 UUAGACUAAUGAAUCUUUUAAAUUUAU-AUCCUUGCUCGUGGUUUCCUCCACGAAUUUAUUUAGUUGAUUAAGCCCCCAAUCAAUGGAAUUCCC----AAGCCCAA-AAAACCAAAAAA-------- ........((((((.......))))))-.(((....((((((......)))))).........(((((((........))))))))))......----........-............-------- ( -16.00, z-score = -1.09, R) >consensus _________________UUAAAUUAAUAAAACUUACUCGUGGUUUCCCCCACACAUUUAUUUAGUUGAUUAAGUCCCCAAUCAAUUGAAUUCCC____AAGCCCAA_AAAACCAAAAA_________ ......................................((((......))))......((((((((((((........))))))))))))..................................... ( -8.82 = -9.32 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:51:18 2011