| Sequence ID | dm3.chrX |
|---|---|
| Location | 16,954,304 – 16,954,396 |
| Length | 92 |
| Max. P | 0.885300 |
| Location | 16,954,304 – 16,954,396 |
|---|---|
| Length | 92 |
| Sequences | 3 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 51.16 |
| Shannon entropy | 0.63485 |
| G+C content | 0.30347 |
| Mean single sequence MFE | -15.49 |
| Consensus MFE | -10.55 |
| Energy contribution | -10.00 |
| Covariance contribution | -0.55 |
| Combinations/Pair | 1.38 |
| Mean z-score | -0.52 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.07 |
| SVM RNA-class probability | 0.885300 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 16954304 92 + 22422827 -----------------UUAUUUAGUAACUAAUAAUAUCUAAGCAUUAACAAAAAAGAAAUGAUUUAAAACACGUUACGUAUACGCAGUGUGGCCAUGUCGUAUGCAUA -----------------.......(((((.......(((......................))).........)))))(((((((..(((....)))..)))))))... ( -12.14, z-score = 0.82, R) >droSim1.chrX 13132135 79 + 17042790 -----------------UUAUUUAGUAACUACUAAUCUUUAAGCAUUUAAAAAAAAG-------------CACGUUACGUAUACGCAAUGUGGACAUAUCGUAUGCGUA -----------------....(((((....))))).......((.(((....))).)-------------)....((((((((((..(((....)))..)))))))))) ( -15.70, z-score = -1.35, R) >droAna3.scaffold_13334 768105 99 - 1562580 UACUAAAUGUUUUCGAGUUUUUAAGUUA--AACGGUGUAUGAUUUUUUUAAAUGAAAA-------UAGCCCAUGAGGCGUAUGAGUGAUUUU-UUAUGACGUAUACGCC .......((((((((.......((((((--.((...)).)))))).......))))))-------))........((((((((.((.((...-..)).)).)))))))) ( -18.64, z-score = -1.02, R) >consensus _________________UUAUUUAGUAACUAAUAAUAUAUAAGCAUUUAAAAAAAAGA_______UA___CACGUUACGUAUACGCAAUGUGGACAUGUCGUAUGCGUA ...........................................................................((((((((((..(((....)))..)))))))))) (-10.55 = -10.00 + -0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:51:17 2011