| Sequence ID | dm3.chrX |
|---|---|
| Location | 16,952,673 – 16,952,785 |
| Length | 112 |
| Max. P | 0.663921 |
| Location | 16,952,673 – 16,952,785 |
|---|---|
| Length | 112 |
| Sequences | 3 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 95.91 |
| Shannon entropy | 0.05639 |
| G+C content | 0.31182 |
| Mean single sequence MFE | -21.70 |
| Consensus MFE | -19.77 |
| Energy contribution | -19.77 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.91 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.663921 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 16952673 112 - 22422827 ACAACAAGCCAAUGUUGAGUGCCAAGUACUUUCUACUUUAACUGUAUUAUAGUACAAGUACUUUCCUUAGUAAGUGCAUUUUAGUUACACUAUUAUGUGGAA--UUUUUUCCCA .(((((......)))))((((....(((((...(((.......)))....)))))..((((((........))))))..........))))....((.((((--....)))))) ( -22.30, z-score = -1.36, R) >droSim1.chrX 13130548 114 - 17042790 ACAACAAGCCAAUGUUGAGUACCAAGUACUUUCUACUUUAACUGCAUUAUAGUACAAGUACUUUCCUUAGUAACAGCAUUUUAGUUACACUAUUAUGUGGAAUAUUUUUUUCCA .(((((......)))))......((((((((..((((.(((.....))).)))).))))))))............((((..(((.....)))..))))((((.......)))). ( -21.40, z-score = -1.68, R) >droSec1.super_17 786463 114 - 1527944 ACAACAAGCCAAUGUUGAGUACCAAGUACUUUCUACUUUAACUGCAUUAUAGUACAAGUACUUUCCUUAGUAACAGCAUUUUAGUUACACUAUUAUGUGGAAUAUUUUUUUCCA .(((((......)))))......((((((((..((((.(((.....))).)))).))))))))............((((..(((.....)))..))))((((.......)))). ( -21.40, z-score = -1.68, R) >consensus ACAACAAGCCAAUGUUGAGUACCAAGUACUUUCUACUUUAACUGCAUUAUAGUACAAGUACUUUCCUUAGUAACAGCAUUUUAGUUACACUAUUAUGUGGAAUAUUUUUUUCCA .(((((......)))))....((((((((((..((((.(((.....))).)))).))))))))............((((..(((.....)))..)))))).............. (-19.77 = -19.77 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:51:17 2011