| Sequence ID | dm3.chr2L |
|---|---|
| Location | 11,626,915 – 11,627,018 |
| Length | 103 |
| Max. P | 0.604966 |
| Location | 11,626,915 – 11,627,018 |
|---|---|
| Length | 103 |
| Sequences | 8 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 62.26 |
| Shannon entropy | 0.77568 |
| G+C content | 0.45681 |
| Mean single sequence MFE | -24.47 |
| Consensus MFE | -8.25 |
| Energy contribution | -7.91 |
| Covariance contribution | -0.34 |
| Combinations/Pair | 2.15 |
| Mean z-score | -1.08 |
| Structure conservation index | 0.34 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.604966 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 11626915 103 + 23011544 ----GGACUAACGAAGAAUGGCGAGGGAAAUGCAAAUGCGCCGCUAAGUAGGCAACGCAAAAACGUCCAUUUGAAAAUGGAGGGA-AUGCUUAGCUAGAUGUGUUGAA ----....(((((......((((...(.....).....))))(((((((((....).......(.((((((....)))))).)..-.))))))))......))))).. ( -26.50, z-score = -1.48, R) >droAna3.scaffold_12916 9344809 90 - 16180835 ----GGGAUAAGGACGACUGGCAUGGGAAAUGCAAAUGCGUUGCUAAGUAGGCAGCGGAAAAAAUUCUAACUGAAGUUGAUGGAAUGUGCUGGA-------------- ----.............(..((((............(.(((((((.....))))))).)....((((((.(.......).))))))))))..).-------------- ( -21.10, z-score = -1.88, R) >droEre2.scaffold_4929 12857115 103 - 26641161 ----GGACUAACGAAGAAUGGAGAGGGAUAUGCAAAUGCGCCGCUAAGUAGGCAACGCAAAAACGUCCAUUUGAAACUGGAGGGA-AUGCUAAGCUGGAUGUGUUGGA ----...((((((..(((((((.........((....))(((........)))............)))))))....(..(..((.-...))...)..)...)))))). ( -22.00, z-score = 0.02, R) >droYak2.chr2L 8049543 103 + 22324452 ----GGACUAACGAAGAAUGGCGAGGAAAAUGCAAAUGCGCCGCUAAGUAGGCAACGCAAAAACGUCCAUUUGAAGCUGGAGGGA-UUGCUUAGCUUUUUGUGUUGGA ----...(((((((((((.((((..(......).....))))(((((((((....).......(.((((........)))).)..-.))))))))))))).)))))). ( -28.40, z-score = -0.85, R) >droSec1.super_3 7011062 103 + 7220098 ----GGACUAACGAAGAAUGGAGAGGGAAAUGCAAAUGCGCCGCUAAGUAGGCAACGCAAAAACGUCCAUUUGAAAAUGGAGGGA-AUGCUUAGCUAGAUGUGUUGGA ----...((((((............((....((....)).))(((((((((....).......(.((((((....)))))).)..-.))))))))......)))))). ( -26.80, z-score = -2.06, R) >droSim1.chr2L 11434487 103 + 22036055 ----GGACUAACGAAGAAUGGAGAGGGAAAUGCAAAUGCGCCGCUAAGUAGGCAACGCAAAAACGUCCAUUUGAAAAUGGAGGCA-AUGCUUAGCUAGAUGUGUUGGA ----...((((((............((....((....)).))(((((((((....).......(.((((((....)))))).)..-.))))))))......)))))). ( -25.90, z-score = -1.26, R) >droWil1.scaffold_180772 5062440 95 - 8906247 UGCACUGCUCUGAGGAAAGAAAAGAAGAAAUGUUAAUGGUCCAUGACGUCGCCGUCAUCAUUGUCUAUGCCUUUGGGCCUGGGAG-GUGCGGAGGA------------ .((((..((((.(((........((((..(((.(((((....((((((....)))))))))))..)))..))))...))).))))-))))......------------ ( -24.40, z-score = 0.74, R) >droGri2.scaffold_15252 9452607 94 + 17193109 ----GAAAAAAAUGCAAUGGGACAUGGCAAUGCAAAUGCACUGUCAAGUUGGUAAACAGAAAAUGAA-----AAGAAUCAUUGAA-GUGUUUGGAGAAGCGCAG---- ----........(((.....(((.(((((.(((....))).))))).)))..((((((...(((((.-----.....)))))...-.)))))).......))).---- ( -20.70, z-score = -1.90, R) >consensus ____GGACUAACGAAGAAUGGAGAGGGAAAUGCAAAUGCGCCGCUAAGUAGGCAACGCAAAAACGUCCAUUUGAAAAUGGAGGGA_AUGCUUAGCUAGAUGUGUUGGA ...............................(((.....(((........)))..........(.((((((....)))))).)....))).................. ( -8.25 = -7.91 + -0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:33:09 2011