| Sequence ID | dm3.chrX |
|---|---|
| Location | 16,938,739 – 16,938,841 |
| Length | 102 |
| Max. P | 0.677333 |
| Location | 16,938,739 – 16,938,841 |
|---|---|
| Length | 102 |
| Sequences | 5 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 74.81 |
| Shannon entropy | 0.44789 |
| G+C content | 0.47548 |
| Mean single sequence MFE | -21.75 |
| Consensus MFE | -11.98 |
| Energy contribution | -14.18 |
| Covariance contribution | 2.20 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.677333 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chrX 16938739 102 - 22422827 ACCAACUUUUUAUGUUGGCCCACUUAA---AAUUCCCACUUAGCCACUGGCGACUGUGCAUAAUUCCAACUUGCUGAGUGGCCACCAGGAGAAUUCCUUCAUUCG .(((((.......))))).........---(((((((.....(((((((((((...((........))..))))).)))))).....)).))))).......... ( -24.10, z-score = -1.85, R) >droSec1.super_17 772014 102 - 1527944 ACCAACUUUUUAUGUUGGCCCACUUAA---AAUUCCCACUUAGCCACCGGCGACUGUGCAUAAUUCCAACUUGCUGAGUGGCCACCAGGAGAAUUCCUUCGUUCG .(((((.......))))).........---(((((((.....(((((((((((...((........))..)))))).))))).....)).))))).......... ( -25.70, z-score = -2.24, R) >droYak2.chrX 15550582 102 - 21770863 ACCAACUUUUUAUGUUGGCCCACUUAA---AAUUCCCACUUAGCCAACGGCGACUGUGCAUAAUUCCAACUUGCUGAGUGGCCACCAGGAGAAUUCCUUCGUUCG .((..........((((((........---............))))))(((.(((..(((...........)))..))).)))....)).((((......)))). ( -23.35, z-score = -1.39, R) >droEre2.scaffold_4690 7293091 102 - 18748788 ACGAACUUUUUAUGUUUGCCCACUUAA---AAUUCCCACUUAGCCACCGGCGACUGUGCAUAAUUCCAACUUGCUGAGUGGCCACCAGGAGAAUUCCUUCGUUCG .(((((.(((((.((......)).)))---))(((((.....(((((((((((...((........))..)))))).))))).....)).))).......))))) ( -24.10, z-score = -2.11, R) >droWil1.scaffold_181096 6175782 101 - 12416693 UUUGACCUCUCACUCUUUUGCACUCCAUCUCACUGCCCCUCUCUCUCACACACUUGGACUUUUUUUGAGUCGACCCUGCG---ACACGCAGACUUCUUCUGUUC- .........((((((........((((...........................))))........)))).))..(((((---...))))).............- ( -11.52, z-score = 0.02, R) >consensus ACCAACUUUUUAUGUUGGCCCACUUAA___AAUUCCCACUUAGCCACCGGCGACUGUGCAUAAUUCCAACUUGCUGAGUGGCCACCAGGAGAAUUCCUUCGUUCG .(((((.......)))))..............((((......(((((((((((...((........))..)))))).))))).....)))).............. (-11.98 = -14.18 + 2.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:51:14 2011