Locus 15006

Sequence ID dm3.chrX
Location 16,924,870 – 16,924,967
Length 97
Max. P 0.849430
window20677

overview

Window 7

Location 16,924,870 – 16,924,967
Length 97
Sequences 5
Columns 97
Reading direction forward
Mean pairwise identity 93.71
Shannon entropy 0.11345
G+C content 0.47194
Mean single sequence MFE -29.88
Consensus MFE -25.22
Energy contribution -26.22
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -2.12
Structure conservation index 0.84
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.91
SVM RNA-class probability 0.849430
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 16924870 97 + 22422827
GAGCCAGCCGCUUAAUUAACAUUGGGGCCAAGUUGGCAUCGAGUUGGCCACAUCAAAGUGGAAAAGUCUCAUUAUCAGUUGAGGCCUUGGUCGAAUC
((.((((((((((.........((.((((((.(((....))).)))))).))...))))))....((((((........)))))).))))))..... ( -29.60, z-score =  -1.56, R)
>droSim1.chrX 13102115 97 + 17042790
GAGCCAGCCGCUUAAUUAACAUUGGGGCCAAGUUGAAAUCGAGUUGGCCACAUCAAAGUGGAAAAGUCUCAUUAUCAGUUGAGGCCUGGGUCGAAUC
((.((((((((((.........((.((((((.(((....))).)))))).))...))))))....((((((........)))))))))).))..... ( -35.20, z-score =  -3.67, R)
>droSec1.super_17 758324 97 + 1527944
GAGCCAGCCGCUUAAUUAACAUUUGGGCCAAGUUGAAAUCGAGUUGGCCACAUCAAAGUGGAAAAGUCUCAUUAUCAGUUGAGGCCUUGGUUGAAUC
.((((((((((((......(....)((((((.(((....))).))))))......))))))....((((((........)))))).))))))..... ( -32.00, z-score =  -3.07, R)
>droYak2.chrX 15535369 90 + 21770863
GAGCCAGCCGCUUAAUUAACAUUGGGGCCAAGUUCGAAUCGAGUUGGCCACAUCAAAGUGGAAAAGUCCCAUUAUCAGUUGAGGCCUUGG-------
...((((((..((((((.....(((((((((.((((...))))))).((((......))))....)))))).....)))))))))..)))------- ( -23.70, z-score =  -0.49, R)
>droEre2.scaffold_4690 7278488 96 + 18748788
GAGC-AGCCGCUUAAUUAACAUUGGGGCCAAGUUGGAAUCGAGUUGGCCACAUCAAAGUGGAAAAGUCUCAUUAUCAGUUGAGGCCUUGGUCGAAUC
((.(-((((((((.........((.((((((.(((....))).)))))).))...))))))....((((((........)))))).))).))..... ( -28.90, z-score =  -1.81, R)
>consensus
GAGCCAGCCGCUUAAUUAACAUUGGGGCCAAGUUGGAAUCGAGUUGGCCACAUCAAAGUGGAAAAGUCUCAUUAUCAGUUGAGGCCUUGGUCGAAUC
..(((((((((((......(....)((((((.(((....))).))))))......))))))....((((((........)))))).)))))...... (-25.22 = -26.22 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:51:13 2011