| Sequence ID | dm3.chrX |
|---|---|
| Location | 16,917,092 – 16,917,208 |
| Length | 116 |
| Max. P | 0.510556 |
| Location | 16,917,092 – 16,917,208 |
|---|---|
| Length | 116 |
| Sequences | 5 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 71.72 |
| Shannon entropy | 0.51701 |
| G+C content | 0.52522 |
| Mean single sequence MFE | -37.24 |
| Consensus MFE | -20.82 |
| Energy contribution | -22.90 |
| Covariance contribution | 2.08 |
| Combinations/Pair | 1.35 |
| Mean z-score | -0.94 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.510556 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 16917092 116 - 22422827 AGCCUGAAACUCCUCUGAUGUUUCCGGUGAGGUCAUCCAAUAUCUCGACUUUGAUCCCGUGAUGUCCUGGCCGCUGUUCAAAGUGGUUUGCAGCUGGACAGGACCAUGGAAGAGUU .(((.(((((((....)).))))).)))(((((........)))))((((((....(((((..((((((.(((((((............))))).)).))))))))))).)))))) ( -39.30, z-score = -1.65, R) >droSec1.super_17 750688 116 - 1527944 AGCCUGAAAUUCGUCUGAUGAUUCCGGUGAGCUCAUCCAAUAUCUCGACUUUGAUCCCGUGAUGUCCUGGCCGCUGUUCAAAGUGGUUUGCAGCUGGACAGGACCAUGGAAGAGUU .(((.(((..((((...))))))).))).(((((.((((..(((.((..........)).)))((((((.(((((((............))))).)).))))))..)))).))))) ( -34.80, z-score = -0.56, R) >droYak2.chrX 15526826 116 - 21770863 AGCCUGAACUUCUGGGGAGGAUUCCGGCGAGGGCAUCCAAUAUCUCGACUUUGAUCCCGUGAUGUCCUGGCCGCUGUUUAGUGUGGCUUGCAGCUGGGCAGGACCAUGGAAGAGUU .(((.(((((((....)))).))).)))((((..........))))((((((....(((((..((((((.(((((((..((.....)).))))).)).))))))))))).)))))) ( -45.60, z-score = -1.24, R) >droEre2.scaffold_4690 7271287 116 - 18748788 AGCCUGAAAUUCCUCAGAAGAUUCCGGUGAGUGCACCCAAUACCUGGACUUCGAUCCCGUGAUAUCCUGCCCGCUGUUCAGUGUGGUUUGCAGCUGGACAGGACCAUGGAAGAGUU ............(((.((((..(((((((..((....)).)))).)))))))....(((((...(((((((.(((((............))))).)).))))).)))))..))).. ( -34.40, z-score = -0.50, R) >droAna3.scaffold_13334 725943 96 + 1562580 ------------GAUCCAUGGCUUCCGAGCGGGUGCU---UAUGGGAGCAGGAAUCC---AAUAUCCAGACGA--GUCCUGUUUGGAUUGCAGGGCGGCAGGACUAUUGAUGAGUU ------------..(((...((((((((((....)))---)..)))))).)))...(---(((((((.(....--(((((((.......)))))))..).))).)))))....... ( -32.10, z-score = -0.74, R) >consensus AGCCUGAAAUUCCUCUGAUGAUUCCGGUGAGGGCAUCCAAUAUCUCGACUUUGAUCCCGUGAUGUCCUGGCCGCUGUUCAGUGUGGUUUGCAGCUGGACAGGACCAUGGAAGAGUU ..............((((((.....((((....))))...))))))((((((....(((((..((((((.(((((((............))))).)).))))))))))).)))))) (-20.82 = -22.90 + 2.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:51:12 2011