| Sequence ID | dm3.chrX |
|---|---|
| Location | 16,915,349 – 16,915,446 |
| Length | 97 |
| Max. P | 0.544213 |
| Location | 16,915,349 – 16,915,446 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 73.44 |
| Shannon entropy | 0.45079 |
| G+C content | 0.52112 |
| Mean single sequence MFE | -29.86 |
| Consensus MFE | -20.24 |
| Energy contribution | -20.04 |
| Covariance contribution | -0.20 |
| Combinations/Pair | 1.40 |
| Mean z-score | -0.89 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.544213 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 16915349 97 - 22422827 ---GCCUCAGGUGGGAGUGGGGAUAGUU---ACGACUUAUAUG----CAUCACCGGAGGACGAUGGGCGGGGC---AUGAUGAGUACCGCUCUUGGAAAAUGCAUUUUCA ---.((((.(((((..(((.....(((.---...)))....))----).))))).)))).(((.((((((..(---.......)..)))))))))(((((....))))). ( -29.40, z-score = -0.78, R) >droSec1.super_17 748957 97 - 1527944 ---GCCGCAGGUGGGAGUGGGGAUAGUU---ACGACUUAUAUG----CAUCACAGAAGGACGAUGGGCGGGGC---AUGAUGAGUCCCGCUCAUGGAAAAUGCAUUUUCA ---...(((((((.(.(((((.......---....))))).).----)))).........(.(((((((((((---.......))))))))))).)....)))....... ( -31.90, z-score = -1.70, R) >droYak2.chrX 15525095 97 - 21770863 ------GCAGGUGGAAGUGGGCAAAGUU---ACGGCUUAUAUG----CAUCAUCGGAGAACGAUGGGCGGGUCAUGAUGAUGAGUUCCGCUCAUGGAAACUGCAUUUUCA ------((((......((((((.((((.---...))))....(----(.((((((.....))))))))(((((((....))))..))))))))).....))))....... ( -29.60, z-score = -1.27, R) >droEre2.scaffold_4690 7269563 94 - 18748788 ------GCAGGUGGGAGUGGGGAUAGUU---AGGGCUUGUAUG----CAUCACCGGAGAACGAUGGGCGGAGC---AAGAUGAGUCCCGCUCAUGGAAAAUGCAUUUUCA ------(((..(..((((((((....((---(...(((((.((----(.(((.((.....)).))))))..))---))).))).)))))))).....)..)))....... ( -28.60, z-score = -0.89, R) >droAna3.scaffold_13334 723430 110 + 1562580 GCAGUUGCAGGUGGAAAUGGAAAAAGUUUGGGGAGCUAGUAGGAGGUAGUAGGUGGGGCAGAAAAGGGGGGGACAUUUGACGAUCCCCGCCCAUGGCAAAUGCAUUUCCA ((....))...((((((((.(......((((....))))......((.((.(((((((..(..(((..(....).)))..)...))))))).)).))...).)))))))) ( -29.80, z-score = 0.16, R) >consensus ___G__GCAGGUGGGAGUGGGGAUAGUU___ACGGCUUAUAUG____CAUCACCGGAGAACGAUGGGCGGGGC___AUGAUGAGUCCCGCUCAUGGAAAAUGCAUUUUCA ...........((((((((.(...((((.....)))).......................(.(((((((((((..........))))))))))).)....).)))))))) (-20.24 = -20.04 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:51:11 2011