Locus 15003

Sequence ID dm3.chrX
Location 16,914,002 – 16,914,114
Length 112
Max. P 0.927926
window20673 window20674

overview

Window 3

Location 16,914,002 – 16,914,112
Length 110
Sequences 5
Columns 112
Reading direction reverse
Mean pairwise identity 91.47
Shannon entropy 0.14848
G+C content 0.47705
Mean single sequence MFE -36.83
Consensus MFE -29.38
Energy contribution -28.74
Covariance contribution -0.64
Combinations/Pair 1.25
Mean z-score -2.45
Structure conservation index 0.80
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.33
SVM RNA-class probability 0.927926
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 16914002 110 - 22422827
GCGCUUUUCCUCGUGCACCGCAUAAAUCAUUUCUCCUCGAAGGGAGAAGCGUUGUGCAGCGUUGCACAAUGUUGUGUGUGGUUUUUCCAC--UGCAUUCGGAAAAUGGCAUU
((..((((((..(((((..(((((......(((((((....)))))))(((((((((......))))))))))))))((((.....))))--)))))..))))))..))... ( -42.50, z-score =  -3.71, R)
>droEre2.scaffold_4690 7268222 108 - 18748788
GCGC-UUUCUUCUUGCACCGCAUAAAUCAUUUCUCCUUGGAGGGUUAAGCA-UACGCAGCGUUGCACAGUGCUGUGUGUGGUUUUUCCAC--UGCAUUUGGAAAAUGGCAUU
((((-.........))...........(((((.(((.((.((((..((.((-(((((((((((....))))))))))))).))...)).)--).))...))))))))))... ( -33.20, z-score =  -1.32, R)
>droYak2.chrX 15523711 111 - 21770863
GCGCUUUUCCUCGUGCACCGCAUAAAUCAUUUCUCCUUGGAGAGUUAAGCA-UACGCAGCGUUGCACCGCGUUGUGUGCGGUUUUUCCACAUUGCAUUCGGAAAACGGCAUU
((..((((((..(((((((((.........(((((....))))).......-.(((((((((......))))))))))))))...........))))..))))))..))... ( -35.50, z-score =  -1.87, R)
>droSec1.super_17 747539 109 - 1527944
GCGCUUUUCUUCGUGCACCGCAUAAAUCAUUUCUCCUCGGAGGGUUAAGCA-CACGCAGCGUUGCACAAUGUUGUGUGUGGUUUUUCCAC--UGCAUUCGGAAAAUGGCAUU
((..((((((..((((((((.................))).(((..((.((-(((((((((((....))))))))))))).))..)))..--)))))..))))))..))... ( -37.43, z-score =  -2.89, R)
>droSim1.chrX 13095585 109 - 17042790
GCGCUUUUCUUCGUGCACCGCAUAAAUCAUUUCUCCUCGGAGGGUUAAGCA-UACGCAGCGUUGCACAAUGUUGUGUGUGGUUUUUCCAC--UGCAUUCGGAAAAUGGCAUU
((..((((((..((((((((.................))).(((..((.((-(((((((((((....))))))))))))).))..)))..--)))))..))))))..))... ( -35.53, z-score =  -2.45, R)
>consensus
GCGCUUUUCUUCGUGCACCGCAUAAAUCAUUUCUCCUCGGAGGGUUAAGCA_UACGCAGCGUUGCACAAUGUUGUGUGUGGUUUUUCCAC__UGCAUUCGGAAAAUGGCAUU
((..((((((..(((((((((.........(((((....))))).........((((((((((....)))))))))))))))...........))))..))))))..))... (-29.38 = -28.74 +  -0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 4

Location 16,914,004 – 16,914,114
Length 110
Sequences 5
Columns 112
Reading direction reverse
Mean pairwise identity 91.47
Shannon entropy 0.14848
G+C content 0.49533
Mean single sequence MFE -37.13
Consensus MFE -29.68
Energy contribution -29.04
Covariance contribution -0.64
Combinations/Pair 1.25
Mean z-score -2.23
Structure conservation index 0.80
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.97
SVM RNA-class probability 0.864671
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 16914004 110 - 22422827
CCGCGCUUUUCCUCGUGCACCGCAUAAAUCAUUUCUCCUCGAAGGGAGAAGCGUUGUGCAGCGUUGCACAAUGUUGUGUGUGGUUUUUCCAC--UGCAUUCGGAAAAUGGCA
..((..((((((..(((((..(((((......(((((((....)))))))(((((((((......))))))))))))))((((.....))))--)))))..))))))..)). ( -42.80, z-score =  -3.53, R)
>droEre2.scaffold_4690 7268224 108 - 18748788
CCGCGC-UUUCUUCUUGCACCGCAUAAAUCAUUUCUCCUUGGAGGGUUAAGCA-UACGCAGCGUUGCACAGUGCUGUGUGUGGUUUUUCCAC--UGCAUUUGGAAAAUGGCA
..((((-.........))...........(((((.(((.((.((((..((.((-(((((((((((....))))))))))))).))...)).)--).))...)))))))))). ( -33.50, z-score =  -1.11, R)
>droYak2.chrX 15523713 111 - 21770863
CCGCGCUUUUCCUCGUGCACCGCAUAAAUCAUUUCUCCUUGGAGAGUUAAGCA-UACGCAGCGUUGCACCGCGUUGUGUGCGGUUUUUCCACAUUGCAUUCGGAAAACGGCA
..((..((((((..(((((((((.........(((((....))))).......-.(((((((((......))))))))))))))...........))))..))))))..)). ( -35.80, z-score =  -1.69, R)
>droSec1.super_17 747541 109 - 1527944
CCGCGCUUUUCUUCGUGCACCGCAUAAAUCAUUUCUCCUCGGAGGGUUAAGCA-CACGCAGCGUUGCACAAUGUUGUGUGUGGUUUUUCCAC--UGCAUUCGGAAAAUGGCA
..((..((((((..((((((((.................))).(((..((.((-(((((((((((....))))))))))))).))..)))..--)))))..))))))..)). ( -37.73, z-score =  -2.61, R)
>droSim1.chrX 13095587 109 - 17042790
CCGCGCUUUUCUUCGUGCACCGCAUAAAUCAUUUCUCCUCGGAGGGUUAAGCA-UACGCAGCGUUGCACAAUGUUGUGUGUGGUUUUUCCAC--UGCAUUCGGAAAAUGGCA
..((..((((((..((((((((.................))).(((..((.((-(((((((((((....))))))))))))).))..)))..--)))))..))))))..)). ( -35.83, z-score =  -2.19, R)
>consensus
CCGCGCUUUUCUUCGUGCACCGCAUAAAUCAUUUCUCCUCGGAGGGUUAAGCA_UACGCAGCGUUGCACAAUGUUGUGUGUGGUUUUUCCAC__UGCAUUCGGAAAAUGGCA
..((..((((((..(((((((((.........(((((....))))).........((((((((((....)))))))))))))))...........))))..))))))..)). (-29.68 = -29.04 +  -0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:51:10 2011