| Sequence ID | dm3.chrX |
|---|---|
| Location | 16,907,029 – 16,907,103 |
| Length | 74 |
| Max. P | 0.939182 |
| Location | 16,907,029 – 16,907,103 |
|---|---|
| Length | 74 |
| Sequences | 6 |
| Columns | 92 |
| Reading direction | reverse |
| Mean pairwise identity | 69.32 |
| Shannon entropy | 0.51877 |
| G+C content | 0.45340 |
| Mean single sequence MFE | -22.43 |
| Consensus MFE | -13.94 |
| Energy contribution | -14.56 |
| Covariance contribution | 0.62 |
| Combinations/Pair | 1.41 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.45 |
| SVM RNA-class probability | 0.939182 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 16907029 74 - 22422827 ----------------UCGUGCUACUUGCAUAAUUU-UU-UCAUUCCGCAAUUGUGCAGAAACCCCAUUUUGGGUGGCGGGGCAUUGGAUGG ----------------..(((((..((((((((((.-..-.........))))))))))...((((((.....)))).)))))))....... ( -18.60, z-score = 0.22, R) >droSim1.chrX 13088885 74 - 17042790 ----------------UCGUGCUACUUGCAUAAUUU-UU-UCAUUCCGCAAUUGUGCAGAAACCCCAUUUUGGGUGGUGGGGUAGUGGAUGG ----------------.(((.((((((((((((((.-..-.........)))))))))...((((((((......)))))))))))))))). ( -24.20, z-score = -1.97, R) >droSec1.super_17 740614 74 - 1527944 ----------------UCGUUCUACUUGCAUAAUUU-UU-UCAUUCCGCAAUUGUGCAGAAACCCCAUUUUGGGUGGUGGGGUAGUGGAUGG ----------------.(((.((((((((((((((.-..-.........)))))))))...((((((((......)))))))))))))))). ( -24.20, z-score = -2.36, R) >droYak2.chrX 15516923 75 - 21770863 ----------------UCGUGCUACUUGCAUAAUUCGUU-UUAUUCCGCAAUUGUGCAGAAACCCCAUUUUGGGUGCUGGGUUAGUGGAUGG ----------------.(((.((((((((((((((((..-......)).)))))))))..((((((((.....)))..))))))))))))). ( -21.10, z-score = -1.17, R) >droEre2.scaffold_4690 7262057 74 - 18748788 ----------------UCGUGCUACUUUCACAAUUUUUU-CUAUUCCGCAAUUGUGCAGAAACCCCACUUUGGAUGGUGGGGUAGUGGGGG- ----------------........((..(((........-...(((.(((....))).)))((((((((......)))))))).)))..))- ( -25.80, z-score = -2.60, R) >dp4.chrXL_group1e 1042022 89 - 12523060 UCGUGCUUUUCGAGUGCAAUUCUUUCAGCCUGAUACGCCACCAAUUGAUGAUUGAGUUCUCUCAUUAUUUUUCGUGGAGGUAUAAUGGG--- ..(..(((...)))..)...........((..((((.((((.((..((((((.(((....))))))))).)).))))..))))...)).--- ( -20.70, z-score = -0.76, R) >consensus ________________UCGUGCUACUUGCAUAAUUU_UU_UCAUUCCGCAAUUGUGCAGAAACCCCAUUUUGGGUGGUGGGGUAGUGGAUGG .....................((((((((((((((..............))))))))))..((((((((......)))))))).)))).... (-13.94 = -14.56 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:51:08 2011