Locus 15001

Sequence ID dm3.chrX
Location 16,905,965 – 16,906,037
Length 72
Max. P 0.689255
window20671

overview

Window 1

Location 16,905,965 – 16,906,037
Length 72
Sequences 6
Columns 75
Reading direction forward
Mean pairwise identity 85.94
Shannon entropy 0.26270
G+C content 0.50226
Mean single sequence MFE -22.50
Consensus MFE -16.09
Energy contribution -15.15
Covariance contribution -0.94
Combinations/Pair 1.27
Mean z-score -1.80
Structure conservation index 0.72
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.42
SVM RNA-class probability 0.689255
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 16905965 72 + 22422827
AAGAAAUCGGUGUCAUGUUAAUGACCGAUUAGCAUGGCGUGUGCACCAUCGGGA---CCUAAGUUUUCCGGGAUG
.....(((((((((((((((((.....)))))))))))(....)))).((((((---........))))))))). ( -20.80, z-score =  -1.03, R)
>droSim1.chrX 13087863 72 + 17042790
GAGAAAUCGGUGUCAUGUUAAUGACCGAUUAGCAUGGCGUGUGCACCACCAGGA---CCUAAGUUUUCCUGGAUG
((....))((((((((((((((.....)))))))))))(....)))).((((((---.........))))))... ( -24.70, z-score =  -2.87, R)
>droSec1.super_17 739631 72 + 1527944
GAGAAAUCGGUGUCAUGUUAAUGACCGAUUAGCAUGGCGUGUGCACCACCAGGA---CCUAAGUUUUCCUGGAUG
((....))((((((((((((((.....)))))))))))(....)))).((((((---.........))))))... ( -24.70, z-score =  -2.87, R)
>droYak2.chrX 15515726 75 + 21770863
GAGAAAUCGGUGUCAUGUUAAUGACCGAUUAGCAUGGCGUGUGCACCACCGGAGUAGCCCAAGUUUUCCCGGAUG
((....))((((((((((((((.....)))))))))))(....)))).((((...(((....)))...))))... ( -23.20, z-score =  -1.92, R)
>droEre2.scaffold_4690 7261074 71 + 18748788
-CAGAAUCGGUGUCAUGUUAAUGACCGAUUAGCAUGGCGUGUGCACCACCGGAG---CCUAGGUUUUCCGGGAAG
-.....((((((((((((((((.....)))))))))))(....)))).((((((---(....))..))))))).. ( -23.80, z-score =  -1.79, R)
>droAna3.scaffold_13334 711454 66 - 1562580
ACGAAAUCGGUGUCAUGUUAAUGACCGAUUAGCAUGGCGUGUGCAACACCGCGG---GGCAAGUUUUUC------
....((((((..((((....)))))))))).((.(.(((.(((...)))))).)---.)).........------ ( -17.80, z-score =  -0.32, R)
>consensus
GAGAAAUCGGUGUCAUGUUAAUGACCGAUUAGCAUGGCGUGUGCACCACCGGGA___CCUAAGUUUUCCGGGAUG
..((((.(((((.(((((((((.....)))))))))((....))..))))((......))..).))))....... (-16.09 = -15.15 +  -0.94)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:51:07 2011