| Sequence ID | dm3.chr2L |
|---|---|
| Location | 1,044,331 – 1,044,437 |
| Length | 106 |
| Max. P | 0.628951 |
| Location | 1,044,331 – 1,044,437 |
|---|---|
| Length | 106 |
| Sequences | 10 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 76.87 |
| Shannon entropy | 0.47601 |
| G+C content | 0.41542 |
| Mean single sequence MFE | -26.95 |
| Consensus MFE | -12.46 |
| Energy contribution | -13.62 |
| Covariance contribution | 1.16 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.628951 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 1044331 106 - 23011544 -CAAUGGCGUCAUAUGGACAAAUGUCUGUAUUACAGAACCU--CGACUAUGUCG--------UCUACGAC-AAGGCAAUCCAUUUACUUGAUGAGAUUGCAAGCAGUUUGGUGACAUU -.......(((((((((((....))))))))......(((.--.((((.(((((--------....))))-)..((((((((((.....)))).))))))....)))).))))))... ( -31.80, z-score = -2.54, R) >droSim1.chr2L 1014884 105 - 22036055 -CAAUGGCGUCAUAUGGACAAAUGUCUGUAUUACAGAACCU--CGACUAU-UCG--------UCUACGAC-AAGGCAAUCCAUUUACUUGAUGAGAUUGCAAGCAGUUUGGUGACAUU -.....(((((((((((((....))))))))..........--.(((...-..)--------))...)))-...((((((((((.....)))).))))))..))....((....)).. ( -27.60, z-score = -1.67, R) >droSec1.super_14 997685 106 - 2068291 -CAAUGGCGUCAUAUGGACAAAUGUCUGUAUUACAGAACCU--CGACUAUGUCG--------UCUACGAC-AAGGCAAUCCAUUUACUUGAUGAGAUUGCAAGCAGUUUGGUGACAUU -.......(((((((((((....))))))))......(((.--.((((.(((((--------....))))-)..((((((((((.....)))).))))))....)))).))))))... ( -31.80, z-score = -2.54, R) >droEre2.scaffold_4929 1086046 105 - 26641161 -CAAUGGCGUCAUAUGGACAAAUGUCUCUAUUGCAGAACCU--CGACUAUGUCG--------UCUGCGAC-AAGGCAAUCCAUUUACUUGAUGAGAUUGC-AGCAGUUUGGUGACAUU -.....((((((((.((((....)))).))).(((((....--((((...))))--------))))))))-...((((((((((.....)))).))))))-.))....((....)).. ( -31.80, z-score = -1.90, R) >droYak2.chr2L 1019936 108 - 22324452 -CAAUGGCGUCAUAUGGACAAAUGUCUGUAUUACAGAACCUACGGACUAUGUCG--------UCUACGAC-AAGGCAAUCCAUUUACUUGAUGGGAUUGCAAGCAGUUUGGUGACAUU -.......(((((((((((....)))))).............((((((.(((((--------....))))-)..((((((((((.....))).)))))))....)))))))))))... ( -32.50, z-score = -2.46, R) >droAna3.scaffold_12943 3563673 92 - 5039921 -CAAUGGCGUCAUAUGGACAAAUGUCUGUAUUACAAGAC------------------------CUAGAAU-ACGGCCAUCCAUUUACUAAAUGAGAUUGCAAGCAUUUUGGUGACAUU -.......(((((((((((....))))))))......((------------------------(.(((((-...((.(((((((.....)))).))).))....)))))))))))... ( -20.10, z-score = -0.95, R) >droPer1.super_8 657162 116 - 3966273 -UAAUGCCGUCAUAUGGACAAAUGUCUGUAUUACAAAAACC-UCGACUACGACGAACGACGACCGACGACGACGACAAUCCAUUUACUUAAUGAGAUUGCAAGCGUUUUGGUGACAUU -.((((.((((((((((((....))))))))........(.-(((....))).)...))))(((((.((((....(((((((((.....)))).)))))....)))))))))..)))) ( -28.60, z-score = -2.56, R) >dp4.chr4_group3 9468509 117 - 11692001 GUAAUGCCGUCAUAUGGACAAAUGUCUGUAUUACAAAAACC-UCGACUACGACGAACGACGACCGACGACGACGACAAUCCAUUUACUUAAUGAGAUUGCAAGCGUUUUGGUGACAUU ..((((.((((((((((((....))))))))........(.-(((....))).)...))))(((((.((((....(((((((((.....)))).)))))....)))))))))..)))) ( -28.60, z-score = -2.02, R) >droWil1.scaffold_180772 4342895 101 - 8906247 -CAAUGGCGUCAUAUGCGAAAAUGUCUCUAUCACGAAACCU--CGACAACG-----------ACAUCGUCGACGACAAUCCAUUUACUUAAUGAGAUUGCAGGCG---UAGUGACAUU -.......(((((((((((..(((((.......(((....)--)).....)-----------))))..))..(..(((((((((.....)))).)))))..))))---).)))))... ( -25.20, z-score = -1.32, R) >droMoj3.scaffold_6500 22941779 91 - 32352404 -CAAUGGCGUCAUAUGGCAUAUUGCACAAACCUCAA-------CGACAGCG-----------ACAACGACAAUGUCAAUCCAUUUACUUAAUGAAAUUUCAAGU---CUGAUU----- -(((((..(((....))).)))))............-------.(((...(-----------(((.......))))....((((.....)))).........))---).....----- ( -11.50, z-score = 0.94, R) >consensus _CAAUGGCGUCAUAUGGACAAAUGUCUGUAUUACAAAACCU__CGACUAUGUCG________UCUACGAC_AAGGCAAUCCAUUUACUUAAUGAGAUUGCAAGCAGUUUGGUGACAUU ......((((.((((((((....)))))))).)).......................................(.(((((((((.....)))).))))))..))....((....)).. (-12.46 = -13.62 + 1.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:07:35 2011