| Sequence ID | dm3.chr2L |
|---|---|
| Location | 43,502 – 43,631 |
| Length | 129 |
| Max. P | 0.784397 |
| Location | 43,502 – 43,597 |
|---|---|
| Length | 95 |
| Sequences | 4 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 89.41 |
| Shannon entropy | 0.16990 |
| G+C content | 0.45024 |
| Mean single sequence MFE | -24.96 |
| Consensus MFE | -20.04 |
| Energy contribution | -21.10 |
| Covariance contribution | 1.06 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.68 |
| SVM RNA-class probability | 0.784397 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 43502 95 + 23011544 GCUACCAUAUCUUGUGUGCUCUACACUAGCUAGCCAACAACAAUCCAUACUGGAGACGGAACGGAGACUU--CAAAAUAAGUUUCCGAGCAGUGACU ((.((((.....)).))))....((((.(((..................(((....)))..(((((((((--......))))))))))))))))... ( -26.30, z-score = -2.65, R) >droSim1.chr2L 48779 95 + 22036055 GCUGCCAUAUCUAGUGUGCUCUAUAAUAGCUAACCAACAACAAUCCAUACUGGAGACGGAGCGCAGACUA--CAAAAUAAGUUUCCGAGCAGUGACU (((((....(((((((((...........................)))))))))..((((.....((((.--.......)))))))).))))).... ( -19.93, z-score = -0.57, R) >droSec1.super_14 48091 95 + 2068291 GCUGCCAUAUCUAGUGUGCUCUAUACUAGCUAUCCAACAACAAUCCAUACUGGAGACGGAGCGGAGACUA--CAAAAUAAGUUUCCGAGCAGUGACU (((((.(((.((((((((...)))))))).)))................(((....)))..((((((((.--.......)))))))).))))).... ( -27.80, z-score = -2.63, R) >droYak2.chr2L 37087 97 + 22324452 GCAGUCAUACCUAGUAUGCUCUAUACUAGCUAACCAACCACAAUCCAUACUGGAGACGGAACGGAUACUUUACAAAAUAAGUGGCCGGGCAGUGACU ..((((((..((((((((...))))))))....((..((((.((((...(((....)))...))))...(((.....)))))))..))...)))))) ( -25.80, z-score = -2.06, R) >consensus GCUGCCAUAUCUAGUGUGCUCUAUACUAGCUAACCAACAACAAUCCAUACUGGAGACGGAACGGAGACUA__CAAAAUAAGUUUCCGAGCAGUGACU (((((..((.((((((((...)))))))).)).................(((....)))..(((((((((........))))))))).))))).... (-20.04 = -21.10 + 1.06)
| Location | 43,538 – 43,631 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 68.02 |
| Shannon entropy | 0.52005 |
| G+C content | 0.44526 |
| Mean single sequence MFE | -24.38 |
| Consensus MFE | -12.36 |
| Energy contribution | -13.68 |
| Covariance contribution | 1.32 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.30 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.668174 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 43538 93 + 23011544 ------------ACAACAAUCCAU-ACUGGAGACGGAACGGAGACU--UCAAAAUAAGUUUCCGAGCAGUGACUGUAUCGAAUC-UAUGUAGAGCACGGAUUGGGUGCU---- ------------.........(((-.(((....)))..((((((((--(......)))))))))....)))...(((((.((((-..((.....))..)))).))))).---- ( -29.70, z-score = -3.11, R) >droSim1.chr2L 48815 93 + 22036055 ------------ACAACAAUCCAU-ACUGGAGACGGAGCGCAGACU--ACAAAAUAAGUUUCCGAGCAGUGACUGUAUCGAAUC-UAUGUAGAGAACGGAUUGGGUGCA---- ------------....((((((..-.(((....)))........((--(((.....((.(((.((((((...)))).))))).)-).))))).....))))))......---- ( -21.00, z-score = -0.45, R) >droSec1.super_14 48127 93 + 2068291 ------------ACAACAAUCCAU-ACUGGAGACGGAGCGGAGACU--ACAAAAUAAGUUUCCGAGCAGUGACUGUAUCGAAUC-UAUGUAGAGAACGGAUUGGGUGCA---- ------------.........(((-.(((....)))..((((((((--........))))))))....)))...(((((.((((-..(.......)..)))).))))).---- ( -26.10, z-score = -2.21, R) >droYak2.chr2L 37123 93 + 22324452 ------------ACCACAAUCCAU-ACUGGAGACGGAACGGAUACUUUACAAAAUAAGUGGCCGGGCAGUGACUAUAUC-AAUC-UAUGUAGAGCACGGACUGAGGCU----- ------------.((.((.(((..-.(((....)))..(((.(((((........))))).)))....(((.((((((.-....-.))))))..)))))).)).))..----- ( -25.70, z-score = -2.31, R) >droGri2.scaffold_15252 17078869 110 + 17193109 ACUUUAUACGGUGCAAUGCUAGAUGAAUUGAGCUCGAAUGUCGUAU--UUGCAAUGGGUAAGC-AACAAUGCCUGCUUCGAUUUACUUUUUUAGUCCCGAUUGGUAGAUUGCC ........(((..(......((.((((((((((.((((((...)))--)))....(((((...-.....))))))).))))))))))......)..)))...(((.....))) ( -19.40, z-score = 1.57, R) >consensus ____________ACAACAAUCCAU_ACUGGAGACGGAACGGAGACU__ACAAAAUAAGUUUCCGAGCAGUGACUGUAUCGAAUC_UAUGUAGAGAACGGAUUGGGUGCA____ ................((((((....(((....)))..((((((((..........)))))))).................................)))))).......... (-12.36 = -13.68 + 1.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:05:01 2011