| Sequence ID | dm3.chrX |
|---|---|
| Location | 16,897,604 – 16,897,694 |
| Length | 90 |
| Max. P | 0.996642 |
| Location | 16,897,604 – 16,897,694 |
|---|---|
| Length | 90 |
| Sequences | 7 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 57.19 |
| Shannon entropy | 0.79972 |
| G+C content | 0.51734 |
| Mean single sequence MFE | -29.23 |
| Consensus MFE | -9.43 |
| Energy contribution | -9.14 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.27 |
| Mean z-score | -2.51 |
| Structure conservation index | 0.32 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.96 |
| SVM RNA-class probability | 0.996642 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 16897604 90 + 22422827 -----AUCCCCGCACGCUGGCAAAGGGGCCACAUGGCGUAUGCGCGAUA--AUAUUGCGCAUACG-----UCAGCAUUCUGUUUACGUUCUCCUCGCUACUC -----......((..((((((......(((....)))(((((((((((.--..))))))))))))-----))))).....(....).........))..... ( -31.40, z-score = -2.36, R) >droSim1.chrX 13079182 75 + 17042790 -----UUUCCCGCACGCUGGCAGAGGGACCACCCUUCGUAUGCUCGAUA--AUAUUGCGCAUACG-----UCAGCAUUCUGUUUCAU--------------- -----..........((((((.(((((.....)))))((((((.((((.--..)))).)))))))-----)))))............--------------- ( -26.90, z-score = -3.82, R) >droSec1.super_17 730089 76 + 1527944 -----UUUUCCGCACGCUGGCAGAGGGACCACAUGGCGUAUGCGCGAUA--AUAUUGCGCAUACG-----UCAGCAUUCUGUUUACUC-------------- -----..........(..(((((((.(......(((((((((((((((.--..))))))))))))-----))).).)))))))..)..-------------- ( -28.40, z-score = -3.18, R) >droYak2.chrX 15507237 79 + 21770863 ----------------UUCACAGAGGGACCACAUGGCGUAUGCGCGAUA--AUAUUGCGCAUACG-----UCAGCAGUCUGUUUACGAUCUGCUCGCCACUC ----------------......(((((......(((((((((((((((.--..))))))))))))-----)))((((..((....))..))))...)).))) ( -32.50, z-score = -4.26, R) >droEre2.scaffold_4690 7253176 73 + 18748788 ----------------------UUCGGUCCACAUGGCGUAUGCGCGAUA--AUAUUGCGCAUACG-----UCAGCAUUCUGCUUGCGUUCGCUGCGCCACUC ----------------------...(((.(((.(((((((((((((((.--..))))))))))))-----)))(((.......)))....).)).))).... ( -29.80, z-score = -3.03, R) >dp4.chrXL_group1e 1029902 102 + 12523060 GCCACCGCAUCGCUUUGACUCGCAUGGAGCACAUGGCGUAUUCGUGAUGUGGUGCUAAGUAUACGCACAUUCAAAAAUUUGCCUACGUGCACAAUCUCUCAC ((.((((((((((....((.(.((((.....))))).))....)))))))))))).........((((...(((....))).....))))............ ( -27.80, z-score = -0.78, R) >droPer1.super_30 792848 102 - 958394 GCCACCGCAUCGCUUUGACUCGCAUGGAGCACAUGGCGUAUGCGUGAUGUGGUGCUAAGUAUACGCACAUUCAAAAAUUUGCCUACGUGCACAAUCUCUCAC ((.((((((((((....((.(.((((.....))))).))....)))))))))))).........((((...(((....))).....))))............ ( -27.80, z-score = -0.13, R) >consensus ______UC_CCGCACGCUCGCAGAGGGACCACAUGGCGUAUGCGCGAUA__AUAUUGCGCAUACG_____UCAGCAUUCUGUUUACGUUC_C__CGCCACUC ....................................(((((((.((((.....)))).)))))))..................................... ( -9.43 = -9.14 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:51:03 2011