| Sequence ID | dm3.chrX |
|---|---|
| Location | 16,895,165 – 16,895,260 |
| Length | 95 |
| Max. P | 0.991097 |
| Location | 16,895,165 – 16,895,260 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 90.99 |
| Shannon entropy | 0.16052 |
| G+C content | 0.35042 |
| Mean single sequence MFE | -19.44 |
| Consensus MFE | -16.64 |
| Energy contribution | -17.64 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.93 |
| Structure conservation index | 0.86 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.46 |
| SVM RNA-class probability | 0.991097 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 16895165 95 + 22422827 UUGAAUGAAUAAAUCAUU-CGAUUUAUUCAAAUGCCAUAUCGAUUUCUUAACGUCCAACUUAUUCGGCAUUGUUGGCCAAUUUCCCAACACACACA .....((((((((((...-.))))))))))((((((.............................))))))(((((........)))))....... ( -20.05, z-score = -3.28, R) >droSim1.chrX 13076717 95 + 17042790 UUGAAUGAAUAAAUCAUU-CGAUUUAUUCAAAUGCCAUAUCGAUUUCUUAACGGCCAACUUAUUCGGCAUUGUUGGCCAAUUUCCCAACACACACA .....((((((((((...-.))))))))))......................(((((((............))))))).................. ( -22.10, z-score = -3.47, R) >droSec1.super_17 727614 95 + 1527944 UUGAAUGAAUAAAUCAUU-CGAUUUAUUCAAAUGCCAUAUCGAUUUCUUAACGGCCAACUUAUUCGGCAUUGUUGGCCAAUUUCCCAACACACACA .....((((((((((...-.))))))))))......................(((((((............))))))).................. ( -22.10, z-score = -3.47, R) >droEre2.scaffold_4690 7250768 95 + 18748788 UUGAAUGAAUAAAUCAUU-CGAUUUAUUCAAAUGCCAUAUCGAUUUCUUAACGUCCAACUUAUUCGGCAUUGUUAUCCAAUUUUCCAGCACACACA .....((((((((((...-.))))))))))((((((.............................))))))......................... ( -14.75, z-score = -1.95, R) >droAna3.scaffold_13334 693263 91 - 1562580 UCGAAUGAAUAAAUCAUUUCGUUUUAUUCAAAUUC--UAUCGAUUUCUUAACGGCCAACUUGUCCGCCAUUGUUGGCCAAUUCCGCAAUACAA--- ..(((((((((((.(.....).))))))))..)))--...............(((((((.((.....))..)))))))...............--- ( -18.20, z-score = -2.49, R) >consensus UUGAAUGAAUAAAUCAUU_CGAUUUAUUCAAAUGCCAUAUCGAUUUCUUAACGGCCAACUUAUUCGGCAUUGUUGGCCAAUUUCCCAACACACACA .....((((((((((.....))))))))))......................(((((((............))))))).................. (-16.64 = -17.64 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:51:03 2011