| Sequence ID | dm3.chrX |
|---|---|
| Location | 16,894,207 – 16,894,306 |
| Length | 99 |
| Max. P | 0.554915 |
| Location | 16,894,207 – 16,894,306 |
|---|---|
| Length | 99 |
| Sequences | 7 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 65.36 |
| Shannon entropy | 0.70762 |
| G+C content | 0.49559 |
| Mean single sequence MFE | -15.51 |
| Consensus MFE | -6.89 |
| Energy contribution | -6.44 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.41 |
| Mean z-score | -0.68 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.554915 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 16894207 99 + 22422827 UUGCCAUUUGCAGGCACUCAACUUGAUUUAGGUCCCAGUCACGCCCCUGACUCCGACGUUCUUCAACUU-UCUUCCACAUUUUGCCACACCUUCCAGCUU--- .((((.......))))......((((...(.(((..(((((......)))))..))).)...))))...-..............................--- ( -15.10, z-score = -0.69, R) >droSim1.chrX 13075755 99 + 17042790 UUGCCAUUUGCAGGCACUCAACUUGAUUUAGGUCCCAGUCACGCCCCUGACUCCGACUUUCUUCAGCUU-UCUCCCUCAUUCUGCCACACCUUCCAGUUU--- .((((.......))))......((((...(((((..(((((......)))))..)))))...))))...-..............................--- ( -16.50, z-score = -0.97, R) >droSec1.super_17 726660 99 + 1527944 UUGCCAUUUGCAGGCACUCAACUUGAUUUAGGUCCCAGUCACGCCCCUGACUCCGACUUUCUUCAGCUU-UCUCCCACAUUCUGCCACACCUUCCAUUUU--- .((((.......))))......((((...(((((..(((((......)))))..)))))...))))...-..............................--- ( -16.50, z-score = -1.70, R) >droYak2.chrX 15503784 83 + 21770863 UUGCCAUUUGCAGGCACUCAACUUGAUUUAGGUCCCAGUCACGCCCCUGACU----------------U-UCUCCCACAUUCUGCCACACCUUCCAAUUU--- .(((.....)))((((.((.....))....((....(((((......)))))----------------.-...)).......))))..............--- ( -11.80, z-score = -0.58, R) >droEre2.scaffold_4690 7249881 85 + 18748788 UUGCCAUUUGCAGGCACUCAACUUGAUUUAGGUCCCAGUCACGCCCCUGACU----------UCAACAC-CCUCCCACAUUCUGCCACACCUUCCG------- .(((.....)))((((.((.....))....(((...(((((......)))))----------.....))-)...........))))..........------- ( -11.60, z-score = -0.50, R) >droAna3.scaffold_13334 690650 102 - 1562580 UUGCCAUUCGCAGGCACUCAGCUUGAUUUAGGUCCUGGCCACGCCCCCCUAUAGAUGCCUCCUAUAGAU-GCCUCCUAUAGAUGCCACCAGUGCCACAUGCCA .(((.....)))((((.((.....))....((..((((....((....((((((..((.((.....)).-))...))))))..))..))))..))...)))). ( -24.20, z-score = -0.06, R) >droWil1.scaffold_181096 6126742 100 + 12416693 AUGUAGUAUACACGCAACCAGUAAUCGUGUUCUCUUGUUCUCCAUCUUCAGUCUGAUGUCAUCAUAAGUAGUUUCCGUUUCGUGCUAAAUUGUGCCUUUA--- ............(((((..((((..((.(..(((((((....((((........)))).....))))).))..).)).....))))...)))))......--- ( -12.90, z-score = -0.24, R) >consensus UUGCCAUUUGCAGGCACUCAACUUGAUUUAGGUCCCAGUCACGCCCCUGACUCCGAC_UUCUUCAACUU_UCUCCCACAUUCUGCCACACCUUCCAGUUU___ .(((.....)))((((....(((((...)))))...(((((......)))))..............................))))................. ( -6.89 = -6.44 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:51:02 2011