| Sequence ID | dm3.chrX |
|---|---|
| Location | 16,858,841 – 16,858,938 |
| Length | 97 |
| Max. P | 0.681926 |
| Location | 16,858,841 – 16,858,938 |
|---|---|
| Length | 97 |
| Sequences | 3 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 94.50 |
| Shannon entropy | 0.07574 |
| G+C content | 0.53265 |
| Mean single sequence MFE | -29.40 |
| Consensus MFE | -27.81 |
| Energy contribution | -27.37 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.26 |
| Structure conservation index | 0.95 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.681926 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 16858841 97 + 22422827 UGCCAGGAGGAAGAACGCCAGAGAAGAGGCCACCUCAUCGGUUCCUGAAUCACAGUGGAUUAUUCAGGAGCGGUACACUCAAUUCUACAGGCACGAU ((((.((.(......).)).(((..((((...))))..(.((((((((((...........)))))))))).)....))).........)))).... ( -28.70, z-score = -1.62, R) >droSim1.chrX 13039498 97 + 17042790 UGCCAGGAGGAAGAAUGCCGGAGAAGAGGCCACCUCAUCGGUUCCUGAAUCACAGCGGAUUGUUCAGGAGCAGCACACUCAAUUCCGCAGGCACGAU ((((.((((..((..(((....((.((((...)))).)).(((((((((.((........))))))))))).)))..))...))))...)))).... ( -31.40, z-score = -1.30, R) >droSec1.super_17 692241 97 + 1527944 UGCCAGGAGGAAGAAUGCCGGAGAAGAGGCCACCUCAUCGGUUCCUGAAUCACAGCGGAUUGUUCAGGAGCAGUACACUCAAUUCUACAGGCACGAU ((((.....(.(((((....(((..((((...))))....(((((((((.((........)))))))))))......))).))))).).)))).... ( -28.10, z-score = -0.86, R) >consensus UGCCAGGAGGAAGAAUGCCGGAGAAGAGGCCACCUCAUCGGUUCCUGAAUCACAGCGGAUUGUUCAGGAGCAGUACACUCAAUUCUACAGGCACGAU ((((.(((((.......)).(((..((((...))))....((((((((((...........))))))))))......)))...)))...)))).... (-27.81 = -27.37 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:50:59 2011