Locus 14991

Sequence ID dm3.chrX
Location 16,840,775 – 16,840,838
Length 63
Max. P 0.980705
window20659

overview

Window 9

Location 16,840,775 – 16,840,838
Length 63
Sequences 6
Columns 66
Reading direction forward
Mean pairwise identity 81.04
Shannon entropy 0.35957
G+C content 0.41186
Mean single sequence MFE -19.88
Consensus MFE -14.22
Energy contribution -13.42
Covariance contribution -0.80
Combinations/Pair 1.50
Mean z-score -2.32
Structure conservation index 0.71
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 2.05
SVM RNA-class probability 0.980705
Prediction RNA
WARNING Out of training range. z-scores are NOT reliable.

Download alignment: ClustalW | MAF

>dm3.chrX 16840775 63 + 22422827
---UAUAGUCCACAUGGUCACAGAAUUGGGUAAUUGAAUGUGGAUUCGUAUUCGUGAUUGUGUGUG
---.......((((..(((((.(((((((((.((.....))..))))).)))))))))..)))).. ( -17.90, z-score =  -2.08, R)
>droEre2.scaffold_4690 7194266 66 + 18748788
GGUGCGAGUCCACAUGGCCACAGAAUUGGAUAAUUGAAUGUGGAUUCGUAUUCGUGAUUGUAUGUG
(((((((((((((((..(((......)))........))))))))))))))).............. ( -21.20, z-score =  -2.30, R)
>droYak2.chrX 15450821 63 + 21770863
---CGUAGUCCACAUGGUCACAGAAUUGGGCAAUUGAAUGUGGAUUCGUAUUCGUGAUUGUGUGCG
---.......((((..(((((..((((....))))(((((((....))))))))))))..)))).. ( -17.00, z-score =  -0.91, R)
>droSec1.super_17 674309 63 + 1527944
---GAUAGUCCACAUGGUCACAGAAUUGGGUAAUUGAAUGUGGAUUCGUAUUCGUGAUUGUGUGUG
---.......((((..(((((.(((((((((.((.....))..))))).)))))))))..)))).. ( -17.90, z-score =  -1.83, R)
>droSim1.chrX_random 4379429 63 + 5698898
---GAUAGUCCACAUGGUCACAGAAUUGGGUAAUUGAAUGUGGAUUCGUAUUCGUGAUUGUGUGUG
---.......((((..(((((.(((((((((.((.....))..))))).)))))))))..)))).. ( -17.90, z-score =  -1.83, R)
>droGri2.scaffold_14853 6002921 63 + 10151454
---UAUUUUCUACGCACACACACAUUUACAUAUUUAUACGUGUGUUUGUGUUUGUGUGUGUGUGUG
---.........(((((((((((((..(((((..(((....)))..)))))..))))))))))))) ( -27.40, z-score =  -4.96, R)
>consensus
___GAUAGUCCACAUGGUCACAGAAUUGGGUAAUUGAAUGUGGAUUCGUAUUCGUGAUUGUGUGUG
..........(((((((((((.(((((((((............))))).))))))))))))))).. (-14.22 = -13.42 +  -0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:50:58 2011