Locus 14990

Sequence ID dm3.chrX
Location 16,840,469 – 16,840,619
Length 150
Max. P 0.955744
window20657 window20658

overview

Window 7

Location 16,840,469 – 16,840,583
Length 114
Sequences 5
Columns 115
Reading direction forward
Mean pairwise identity 77.71
Shannon entropy 0.40076
G+C content 0.39888
Mean single sequence MFE -32.50
Consensus MFE -19.32
Energy contribution -20.80
Covariance contribution 1.48
Combinations/Pair 1.27
Mean z-score -2.24
Structure conservation index 0.59
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.62
SVM RNA-class probability 0.955744
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 16840469 114 + 22422827
ACGAUAUCUGGACAGAACGUGUAUAUAGAGAGUGUUUUAUACUAUACUAUCUAUAUGCACUGGGUACAAUUCACGAGUAUCUCACCACACGAAAGUGUGAC-ACAUUUCGGUCAA
..........(((.(((.(((((((((((.(((((........))))).))))))))))).((((((.........))))))...(((((....)))))..-....))).))).. ( -36.20, z-score =  -3.54, R)
>droSim1.chrX_random 4379144 114 + 5698898
ACGAUAUCUGGACAGAACGUGUAUAUAGAGAGUGUUUUAUACUAUACUGACUAUAUGCACUGGGUACAAUUCGCGAGUAUCUCACCACACGAAAGUGUGAC-ACAUUUCAGUCAU
..........(((.(((.((((((((((..(((((........)))))..)))))))))).((((((.........))))))...(((((....)))))..-....))).))).. ( -33.30, z-score =  -2.38, R)
>droSec1.super_17 674018 114 + 1527944
ACGAUAUCUGGACAGAACGUGUAUAUAGAGAGUGUUUUAUACUAUACUGACUAUAUGCACUGGGUACAAUUCGCGAGUAUCUCACCACACGAAAGUGUGAC-ACAUUUCAGUCAU
..........(((.(((.((((((((((..(((((........)))))..)))))))))).((((((.........))))))...(((((....)))))..-....))).))).. ( -33.30, z-score =  -2.38, R)
>droYak2.chrX 15450508 114 + 21770863
ACGAUAUCUGGACAAAACGUGUAUAUAGAGAGUGUUUUAUACUAUACGAGCUAUAUGCACUGGGUACAAUUCGCGAGUAUCUCACCACACGAAAGUAUGAC-ACAUUUCGGUCAU
........(((.......((((((((((...((((........))))...)))))))))).((((((.........))))))..))).((....))(((((-........))))) ( -27.70, z-score =  -1.21, R)
>droAna3.scaffold_13334 981590 99 - 1562580
GCGAUAUCUGCCGAGCACAUAUAUAUUAUAUAUAUCAC-UACUAUAUAGUGUGUAUA---UGGCUACAGUGCCAGGGGA-----------AAGUGUAUGGCCAGAUCCCAGCCA-
((...((((((((.((((((((((((((((((......-...)))))))))))))).---((((......)))).....-----------..)))).))).)))))....))..- ( -32.00, z-score =  -1.67, R)
>consensus
ACGAUAUCUGGACAGAACGUGUAUAUAGAGAGUGUUUUAUACUAUACUGACUAUAUGCACUGGGUACAAUUCGCGAGUAUCUCACCACACGAAAGUGUGAC_ACAUUUCAGUCAU
..........(((.....((((((((((..(((((........)))))..))))))))))..............(((........(((((....))))).......))).))).. (-19.32 = -20.80 +   1.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 8

Location 16,840,508 – 16,840,619
Length 111
Sequences 5
Columns 114
Reading direction forward
Mean pairwise identity 70.77
Shannon entropy 0.52533
G+C content 0.40276
Mean single sequence MFE -26.62
Consensus MFE -12.24
Energy contribution -15.00
Covariance contribution 2.76
Combinations/Pair 1.35
Mean z-score -1.77
Structure conservation index 0.46
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.93
SVM RNA-class probability 0.854248
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 16840508 111 + 22422827
UACUAUACUAUCUAUAUGCACUGGGUACAAUUCACGAGUAUCUCACCACACGAAAGUGUGACACAUUUCGGUCAAAUCUAUGGUGACAAUAAUUGAA-GAGCAAAUAGUUAA--
...........((((.(((.((.(((((.........)))))(((((((((....)))((((........))))......))))))..........)-).))).))))....-- ( -25.20, z-score =  -1.74, R)
>droSim1.chrX_random 4379183 111 + 5698898
UACUAUACUGACUAUAUGCACUGGGUACAAUUCGCGAGUAUCUCACCACACGAAAGUGUGACACAUUUCAGUCAUAUCUAUGGGGACAAUAAUUGAA-GAGCAAAUAGUUAA--
........(((((((.((((((((((((.........)))))....(((((....)))))........))))........((....)).........-..))).))))))).-- ( -28.40, z-score =  -2.48, R)
>droSec1.super_17 674057 111 + 1527944
UACUAUACUGACUAUAUGCACUGGGUACAAUUCGCGAGUAUCUCACCACACGAAAGUGUGACACAUUUCAGUCAUAUCUAUGGGGACAAUAAUUGAA-GAGCAAAUAGUUAA--
........(((((((.((((((((((((.........)))))....(((((....)))))........))))........((....)).........-..))).))))))).-- ( -28.40, z-score =  -2.48, R)
>droYak2.chrX 15450547 113 + 21770863
UACUAUACGAGCUAUAUGCACUGGGUACAAUUCGCGAGUAUCUCACCACACGAAAGUAUGACACAUUUCGGUCAUAUUUAUGGGGACAAUAAUUGGA-AAACAAAUAGCUAAAC
.........((((((.((....((((((.........))))))..(((.....(((((((((........))))))))).((....)).....))).-...)).)))))).... ( -24.10, z-score =  -2.27, R)
>droAna3.scaffold_13334 981628 93 - 1562580
-----------UACUAUAUAGUGUGUAUA-----UGGCUACAGUGCCAGGGGAAAGUGU---AUGGCCAGAUCCCAGCCAGGAAAUAGGUGACUGGAUGGGCCAGUGGGGAG--
-----------..(((((((.(.......-----((((......))))......).)))---)))).....((((.(((........))).(((((.....))))).)))).-- ( -27.02, z-score =   0.09, R)
>consensus
UACUAUACUAACUAUAUGCACUGGGUACAAUUCGCGAGUAUCUCACCACACGAAAGUGUGACACAUUUCGGUCAUAUCUAUGGGGACAAUAAUUGAA_GAGCAAAUAGUUAA__
........(((((((.((((((((((((.........)))))....(((((....)))))........))))........((....))............))).)))))))... (-12.24 = -15.00 +   2.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:50:57 2011