| Sequence ID | dm3.chr2L |
|---|---|
| Location | 11,617,476 – 11,617,573 |
| Length | 97 |
| Max. P | 0.557617 |
| Location | 11,617,476 – 11,617,573 |
|---|---|
| Length | 97 |
| Sequences | 8 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 85.59 |
| Shannon entropy | 0.28720 |
| G+C content | 0.47575 |
| Mean single sequence MFE | -23.01 |
| Consensus MFE | -12.75 |
| Energy contribution | -13.24 |
| Covariance contribution | 0.49 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.19 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.557617 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 11617476 97 - 23011544 -ACUCUCGCGACAUCAGCUACAAAAAUCGCAGCAAUGGUCAUAAAACUUAUACCUUU-GCUGCGAAUUACGAGCCCGCAACUAGCCGCAGCAACAACAC -......(((......(((.......(((((((((.(((.(((.....)))))).))-)))))))......)))..((.....)))))........... ( -25.72, z-score = -3.52, R) >droSim1.chr2L 11425013 97 - 22036055 -ACUAUCGCGACAUCAGCUACAAAAAUCGCAGCAAUGGUCAUAAAACUUAUACCUUU-GCUGCGAAUUACGAGCCCGCAACUAGCCGCAGCAACAACAC -......(((......(((.......(((((((((.(((.(((.....)))))).))-)))))))......)))..((.....)))))........... ( -25.72, z-score = -3.59, R) >droSec1.super_3 7001572 97 - 7220098 -ACUCUCGGGACAUCAGCUACAAAAAUCGCAGCAAUGGUCAUAAAACUUAUACCUUU-GCUGCGAAUUACGAGCCCGCAACUAGCCGCAGCAACAACAC -...............(((.......(((((((((.(((.(((.....)))))).))-))))))).......((..((.....)).)))))........ ( -23.80, z-score = -2.51, R) >droYak2.chr2L 8039880 97 - 22324452 -ACUCGGGCGACAGCAGCUACAAAAAUCGCAGCAAUGGUCAUAAAACUUAUACCUCU-GCUGCGAAUUACGAGCCCGCAACUAGCCGCAGCAACAACAC -.....(((....((.(((.......((((((((..(((.(((.....))))))..)-)))))))......)))..)).....)))............. ( -27.22, z-score = -2.55, R) >droEre2.scaffold_4929 12847793 96 + 26641161 -ACUCGGGCGACACCAGCUACAAAAAUCGCAGCAAUGGUCAUAAAACUUAUACCUUU-GCUGCGAAUUACGAGCCC-CAACUAGCCGCAGCAACAACGC -.(((((((.......))).......(((((((((.(((.(((.....)))))).))-)))))))....))))...-......((....))........ ( -26.50, z-score = -2.72, R) >droAna3.scaffold_12916 9334933 95 + 16180835 ---ACUAGUUACAAGAGCUACAAAAAUCGUGGCAAUGGUCAUAAAACUUAUACCUUU-GCUACGAAUUACGAGGCCACAACUAGCCGCAGCAACAACAC ---.............(((.(.....(((((((((.(((.(((.....)))))).))-))))))).......(((........)))).)))........ ( -23.80, z-score = -3.27, R) >dp4.chr4_group3 2478648 92 - 11692001 CUCUGGCAUAGCAGCAGCAACAAAAAUCGCAGCAAUGGUCAUAAAACUUAUACCUUUCCCUACGAAUUACGAGCCCGCAACUAGCCGCAGAG------- (((((((.(((..((.((........(((.((....(((.(((.....)))))).....)).))).......))..))..))))))..))))------- ( -15.26, z-score = 0.32, R) >droPer1.super_1 3958953 92 - 10282868 CUCUGGCAUAGCAGCAGCAACAGAAAUCGCAGCAAUGGUCAUAAAACUUAUACCUUUCCCUACGAAUUACGAGCCCGCAACUAGCCGCAGAG------- (((((((.(((..((.((.....((.(((.((....(((.(((.....)))))).....)).))).))....))..))..))))))..))))------- ( -16.10, z-score = 0.31, R) >consensus _ACUCGCGCGACAGCAGCUACAAAAAUCGCAGCAAUGGUCAUAAAACUUAUACCUUU_GCUGCGAAUUACGAGCCCGCAACUAGCCGCAGCAACAACAC ................((........(((((((...(((.(((.....))))))....)))))))...........((.....)).))........... (-12.75 = -13.24 + 0.49)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:33:07 2011