| Sequence ID | dm3.chrX |
|---|---|
| Location | 16,830,841 – 16,830,952 |
| Length | 111 |
| Max. P | 0.983389 |
| Location | 16,830,841 – 16,830,952 |
|---|---|
| Length | 111 |
| Sequences | 4 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 87.44 |
| Shannon entropy | 0.20341 |
| G+C content | 0.33963 |
| Mean single sequence MFE | -17.63 |
| Consensus MFE | -14.82 |
| Energy contribution | -14.45 |
| Covariance contribution | -0.37 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.60 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.13 |
| SVM RNA-class probability | 0.983389 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 16830841 111 + 22422827 AUUUAAAUGCAAAAAAGACAAGAUUGAA-AAACAAGACGAAGAGCUCUAUCGAUAAAAUGAAAACUAGCAUAACUAUCGAUAGACAAAUACGCACCGUGAUCGAUAAGCAAC .......(((.............(((..-...)))..(((...(.((((((((((..(((........)))...)))))))))))...((((...)))).)))....))).. ( -17.40, z-score = -2.48, R) >droSim1.chrX 13021061 111 + 17042790 AUUUAAAUGCAAAAAAGACAAGAUUGAA-AAACAAGACGAAAAGCUCUAUCGAUAAAAUGAUAACUAGCAUAACUAUCGAUAGACAAAUACGCACCGCGAUCGAUAAGCAAC .......(((.............(((..-...)))..(((...(.((((((((((..(((........)))...))))))))))).....(((...))).)))....))).. ( -18.60, z-score = -3.04, R) >droSec1.super_17 664517 111 + 1527944 AUUUAAAUGCAAAAAAGACAAGAUUGAA-AAACAAGACGAAGAGGUCUAUCGAUAAAAUGAAAACUAGCAUAACUAUCGAUAGACAAAUACGCACCGCGAUCGAUAAGCAAC .......(((.............(((..-...)))..(((....(((((((((((..(((........)))...))))))))))).....(((...))).)))....))).. ( -22.20, z-score = -4.17, R) >droEre2.scaffold_4690 7184898 103 + 18748788 ---------AAGAAAAGACAAGAUUGAAGAAAAAAGACGAAGAGUUCUAUUGAUAUAGAGAAAACGAACAUGCCUAUCGAUAGACAAAUACGCUCCGUGAUCGAUAAACAAC ---------..........................((((..((((((((((((((...................)))))))))).......))))..)).)).......... ( -12.32, z-score = -0.70, R) >consensus AUUUAAAUGCAAAAAAGACAAGAUUGAA_AAACAAGACGAAGAGCUCUAUCGAUAAAAUGAAAACUAGCAUAACUAUCGAUAGACAAAUACGCACCGCGAUCGAUAAGCAAC ......................(((((................(.((((((((((..(((........)))...))))))))))).....(((...))).)))))....... (-14.82 = -14.45 + -0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:50:53 2011