| Sequence ID | dm3.chrX |
|---|---|
| Location | 16,813,265 – 16,813,357 |
| Length | 92 |
| Max. P | 0.747209 |
| Location | 16,813,265 – 16,813,357 |
|---|---|
| Length | 92 |
| Sequences | 4 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 76.45 |
| Shannon entropy | 0.36467 |
| G+C content | 0.43908 |
| Mean single sequence MFE | -17.91 |
| Consensus MFE | -12.75 |
| Energy contribution | -12.38 |
| Covariance contribution | -0.38 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.57 |
| SVM RNA-class probability | 0.747209 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 16813265 92 - 22422827 AUAUUUUUCGACGCUUUUGUCCAUGU-UUUUCUGCGUCGCAAAACAUGGGCCUUUCCCAAGCGCCUUCAUUUGCGAUGAAAAAAAAAAAGAUC ...(((((((((((............-......)))))(((((....(((((((....))).))))...)))))...)))))).......... ( -22.67, z-score = -1.92, R) >droYak2.chrX 15423719 77 - 21770863 --AUAUUUCUACGCUUUGGUCCGUGU-UUAUCUGCGUCGCAAAACAUGGGCCUUUCCCAAGCGCCUUCAUCAGCAAAGAU------------- --.....(((..((((.(((((((((-((...(((...))))))))))))))......))))((........))..))).------------- ( -20.30, z-score = -2.18, R) >droEre2.scaffold_4690 7168791 80 - 18748788 --AUAUUUCUACGCUUUUGUCCGUGUGUUUUCUGCGUCGCAAAACAUGGGCCUUUCCCAAGCGCCUUCGUCAAAAACAAGAU----------- --.....(((((((........))))(((((..(((.(((......((((.....)))).)))....)))..))))).))).----------- ( -13.90, z-score = -0.03, R) >droSim1.chrX 13003436 71 - 17042790 AUAUUUUUCGACGCUUUUGUCCGUGU-UUUUCUGCGUCGCAAAACAUGGGUCUUUCCCAAGCGCCUUCAUUU--------------------- ...((((.((((((............-......)))))).))))..((((.....)))).............--------------------- ( -14.77, z-score = -1.65, R) >consensus __AUAUUUCGACGCUUUUGUCCGUGU_UUUUCUGCGUCGCAAAACAUGGGCCUUUCCCAAGCGCCUUCAUCAGCAA_GA______________ ...........(((((..((((((((......(((...)))..)))))))).......))))).............................. (-12.75 = -12.38 + -0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:50:49 2011