| Sequence ID | dm3.chrX |
|---|---|
| Location | 16,811,627 – 16,811,714 |
| Length | 87 |
| Max. P | 0.647008 |
| Location | 16,811,627 – 16,811,714 |
|---|---|
| Length | 87 |
| Sequences | 12 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 70.66 |
| Shannon entropy | 0.57888 |
| G+C content | 0.42877 |
| Mean single sequence MFE | -19.82 |
| Consensus MFE | -9.31 |
| Energy contribution | -9.29 |
| Covariance contribution | -0.02 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.17 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.647008 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 16811627 87 + 22422827 CCUCGUUGGCACGACCAGUGCCAAAUGGCCUGGCAAAUAUUGACUCCCG------UCUCGUUAAUACACUGGGCAAAUCA--AGUUUAUGUAAAC---- .....(((((((.....)))))))...(((..(....(((((((.....------....)))))))..)..)))......--.............---- ( -22.80, z-score = -1.45, R) >droPer1.super_56 147322 85 - 431378 CCUUCUUGACACGGACAGUGCCAAAUAGCCGUGCAAAUAUUUGACCAAC------UCUUGUUAACACACUCUGCAAAU----AAUUUAUAUAAAC---- .....(((.(((((.(.((.....)).))))))))).((((((......------...((....)).......)))))----)............---- ( -10.39, z-score = -0.16, R) >dp4.chrXL_group3b 128411 85 - 386183 CCUUCUUGACACGGACAGUGCCAAAUAGCCGUGCAAAUAUUUGACCAAC------UCUUGUUAACACACUCUGCAAAU----AAUUUAUAUAAAC---- .....(((.(((((.(.((.....)).))))))))).((((((......------...((....)).......)))))----)............---- ( -10.39, z-score = -0.16, R) >droAna3.scaffold_13334 951657 91 - 1562580 CCUCCUUGGCACGAUCAGUGCCAAACGGGCGGGCAAAUAUUUGUGCCUGGCACAGCCUCGUUAAUACACUAACCAAAU----AGUUAAUAUCAAC---- ......((((((.....))))))((((((((((((........)))))......))).)))).....((((......)----)))..........---- ( -23.50, z-score = -1.33, R) >droEre2.scaffold_4690 7167285 87 + 18748788 CCUCGUUGGCACGACCAGUGCCAAAUGGCCUGGCAAAUAUUGACUCCCG------UCUUGUUAAUACACUGGGCAAAUCA--AGUUUAUGUAAAC---- .....(((((((.....)))))))...(((..(....(((((((.....------....)))))))..)..)))......--.............---- ( -23.40, z-score = -1.55, R) >droYak2.chrX 15422011 87 + 21770863 CCUCGUUGGCACGACCAGUGCCAAAUGGCCUGGCAAAUAUUGACUGCCG------UCUCGUUAAUACGCUGGGCAAAUCA--AGUUUAUGUAAAC---- .....(((((((.....)))))))...(((..((...(((((((.....------....))))))).))..)))......--.............---- ( -26.50, z-score = -2.01, R) >droSec1.super_17 646102 87 + 1527944 CCUCGUUGGCACGACCAGUGCCAAAUGGCCUGGCAAAUAUUGACUCCCG------UCUCGUUAAUACGCUGGGCAAAUCA--AGUUUAUGUAAAC---- .....(((((((.....)))))))...(((..((...(((((((.....------....))))))).))..)))......--.............---- ( -26.50, z-score = -2.41, R) >droSim1.chrX_random 4371747 87 + 5698898 CCUCGUUGGCACGACCAGUGCCAAAUGGCCUGGCAAAUAUUGACUCCCG------UCUCGUUAAUACGCUGGGCAAAUCA--AGUUUAUGUAAAC---- .....(((((((.....)))))))...(((..((...(((((((.....------....))))))).))..)))......--.............---- ( -26.50, z-score = -2.41, R) >droVir3.scaffold_12970 5384950 84 - 11907090 CCUCUUUGGUACGUCAGGUGCCAAACAAGCGUUCAAAUAUUUGAACAUG-------CCCGUUAAUAUAAUUUGCAAAU----GAUUUAUGCGUAC---- ....((((((((.....))))))))...((((((((....)))))).((-------(..((((...))))..)))...----.......))....---- ( -18.00, z-score = -1.20, R) >droMoj3.scaffold_6473 1467906 79 + 16943266 CGGCGUUGGUACGGCAGGUGCCAAACAAGCGUACAAAUAUUUGGACAUG-------CCCGAUAAUAAAAUUUGCAAAU----AAUUUAUG--------- .(((((((((((.....)))))).......((.(((....))).)))))-------))....................----........--------- ( -14.30, z-score = 0.76, R) >droGri2.scaffold_14853 5971466 84 + 10151454 UGUCUUUGGUACGGCAGGUGCCAAACAAGCGCGCAAAUAUUGAAACAUG-------CCCGAUAACACAAUUUGCAAAU----AAUUUAUGCGCAC---- ....((((((((.....))))))))...((((((((((((((.......-------..)))))......))))).((.----...))..))))..---- ( -18.20, z-score = 0.18, R) >droWil1.scaffold_181150 297635 89 - 4952429 -----UUGGCACGGCAAGUGCCAAACAAGUCUGCAAAUAUUUAAACAACAA-----UUUGAUAAUCGAAUUUGCAAAUAUCUGUAUAACACAAACAAAC -----(((((((.....))))))).......((((.((((((...(((..(-----((((.....)))))))).)))))).)))).............. ( -17.30, z-score = -2.26, R) >consensus CCUCGUUGGCACGACCAGUGCCAAAUAGCCGGGCAAAUAUUGAAUCACG______UCUCGUUAAUACACUGUGCAAAU____AGUUUAUGUAAAC____ .....(((((((.....)))))))........................................................................... ( -9.31 = -9.29 + -0.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:50:48 2011