| Sequence ID | dm3.chrX |
|---|---|
| Location | 16,800,933 – 16,801,037 |
| Length | 104 |
| Max. P | 0.572808 |
| Location | 16,800,933 – 16,801,037 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 79.75 |
| Shannon entropy | 0.36911 |
| G+C content | 0.44563 |
| Mean single sequence MFE | -24.80 |
| Consensus MFE | -13.27 |
| Energy contribution | -13.89 |
| Covariance contribution | 0.62 |
| Combinations/Pair | 1.40 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.572808 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 16800933 104 - 22422827 GAUUUGCGGGCAUCCGUAUAU----CGGACAUUGCCAACUAACAAACUGGCCAAAAAGUCGC-UGAUUUACGGACUU--UGGUCCGCACCUGACAAAG--AAAAUGAAUCCCG (((((((((((.((((((.((----(((..(((((((..........)))).....)))..)-)))).))))))...--..))))))..((.....))--.....)))))... ( -28.50, z-score = -2.20, R) >droSim1.chrX 12992598 103 - 17042790 GAUUUGCGGGCAUCC-UAUAU----CGGACAUUGCCAACUAACAAACUGGCCAAAAAGUCGC-UGAUUUACGGACUU--UGGUCCGCACCUGACAAAG--AAAAUGAAUCCCG (((((((((((((((-.....----.)))...))))............((((((..((((.(-........))))))--))))))))..((.....))--.....)))))... ( -23.40, z-score = -0.94, R) >droSec1.super_17 635771 104 - 1527944 GAUUUGCGGGCAUCCGUAUAU----CGGACAUUGCCAACUAACAAACUGGCCAAAAAGUCGC-UGAUUUACGGACUU--UGGUCCGCACCUGACAAAG--AAAAUGAAUCCCG (((((((((((.((((((.((----(((..(((((((..........)))).....)))..)-)))).))))))...--..))))))..((.....))--.....)))))... ( -28.50, z-score = -2.20, R) >droYak2.chrX 15411576 106 - 21770863 GAUUUGCGGGCAUCCGUAUAU----CGGACAUUGCAAACUAACAAACUGGUGAAAAAGUCGC-UGAUUUACGGACUU--UAACCCGCACCUGACAAAGAAAAAAUGAAUCCCG ((((((((((..((((((.((----(((..(((....((((......)))).....)))..)-)))).))))))...--...)))))..((.....)).......)))))... ( -26.40, z-score = -2.44, R) >droEre2.scaffold_4690 7156826 104 - 18748788 GAUUUGCGGGCAUCCGUAUAU----CGGACAUUGCAGCCUAACAAACUGGCCAAAAAGUCGC-UGAUUUACGGACUU--UAGCCUGCACCUGACAAAG--GAAAUGAAUACCG ....(((((((.((((((.((----(((..(((...(((.........))).....)))..)-)))).))))))...--..)))))))(((.....))--)............ ( -30.80, z-score = -2.93, R) >droAna3.scaffold_13334 938597 111 + 1562580 AAAAUGCGAAAUACGAAAUACAAAAUGAAACUAAUCAACUGGCUGACUGGCCAAUAUGCGACACCAUUAGCUGAUUUAACAUCCUGCACCUGACAAAG--AAAAAUAACACUA ....((((.................(((......)))..(((((....)))))...)))).........((.(((.....)))..))...........--............. ( -11.20, z-score = -0.33, R) >consensus GAUUUGCGGGCAUCCGUAUAU____CGGACAUUGCCAACUAACAAACUGGCCAAAAAGUCGC_UGAUUUACGGACUU__UAGCCCGCACCUGACAAAG__AAAAUGAAUCCCG ....(((((((.((((((.......(((.....((((..........)))).......))).......)))))).......)))))))......................... (-13.27 = -13.89 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:50:47 2011