| Sequence ID | dm3.chrX |
|---|---|
| Location | 16,788,647 – 16,788,719 |
| Length | 72 |
| Max. P | 0.881551 |
| Location | 16,788,647 – 16,788,719 |
|---|---|
| Length | 72 |
| Sequences | 7 |
| Columns | 89 |
| Reading direction | reverse |
| Mean pairwise identity | 57.59 |
| Shannon entropy | 0.74724 |
| G+C content | 0.50963 |
| Mean single sequence MFE | -21.49 |
| Consensus MFE | -8.81 |
| Energy contribution | -8.51 |
| Covariance contribution | -0.30 |
| Combinations/Pair | 1.67 |
| Mean z-score | -1.15 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.05 |
| SVM RNA-class probability | 0.881551 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 16788647 72 - 22422827 -------UGAGGCAUGAUCGCAUCCAGUGAUCUAAAUGAUCAGCGAUCGGAUUGC------AGCAUCGACUUCCCUCACAGCCGC---- -------...(((..((((((......(((((.....)))))))))))(((...(------......)...)))......)))..---- ( -20.80, z-score = -0.72, R) >droMoj3.scaffold_6473 1431503 65 - 16943266 ---------UACGGUAGUUUGAUAGAGCAAUUUG---GUUUGGCUAUCGAGCUAGG-----CAUUUUGCCAGUUCUCACAGU------- ---------.....(((((((((((..(((....---..))).)))))))))))((-----(.....)))............------- ( -19.30, z-score = -2.31, R) >droSim1.chrX_random 4369014 72 - 5698898 -------UGGGGCAUGAUCGCGUCCAGUGAUCUAAAUGAUCAGCGAUCGGAUUGC------AGCAUCGGCUUCCCGCACAGCCGC---- -------...(((..((((((......(((((.....)))))))))))(((..((------.......)).)))......)))..---- ( -22.30, z-score = 0.17, R) >droSec1.super_17 616750 56 - 1527944 --------------UGAUCGCGUCCAGUGAUCUAAAUGAUCAGCGAUCGGAUUGC------AGCAUCUGUAGCCGC------------- --------------.((((((......(((((.....)))))))))))((.((((------((...))))))))..------------- ( -19.50, z-score = -1.97, R) >droYak2.chrX 15400143 71 - 21770863 -------UGGGGCAUGAUCGCAUCUAAUGAUCCAAAUGAUCAGCGAUCGGAUUGC------AGCUUCGGCUUCCC-CACAGCCGC---- -------((((((((((((((......(((((.....))))))))))))...)))------(((....)))..))-)).......---- ( -24.70, z-score = -1.49, R) >droEre2.scaffold_4690 7144994 71 - 18748788 -------UGAGGCAUGAUCGCAUCUAAUGACCUAAAUGAUCAGCGAUCGGAUGGC------AGCUUCGGCUUCCC-CACAGCCGC---- -------...(((..(((((((((.............)))..))))))((..((.------(((....))).)))-)...)))..---- ( -24.12, z-score = -1.71, R) >droAna3.scaffold_13334 926417 88 + 1562580 UGAGGCAUGAGAGAUGGUGGGGGAU-CUGAUCUAAACGGUCGUCGAUCAAAUUUCUUCCUUAUAUUUUGUAUUCUUUACAGUCAGUCAG (((((...((((..((((.((.(((-(..........)))).)).))))..))))..)))))....(((((.....)))))........ ( -19.70, z-score = -0.04, R) >consensus _______UGAGGCAUGAUCGCAUCCAGUGAUCUAAAUGAUCAGCGAUCGGAUUGC______AGCUUCGGCUUCCCUCACAGCCGC____ ..............(((((((......(((((.....))))))))))))........................................ ( -8.81 = -8.51 + -0.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:50:46 2011