Locus 14981

Sequence ID dm3.chrX
Location 16,787,291 – 16,787,411
Length 120
Max. P 0.753013
window20644

overview

Window 4

Location 16,787,291 – 16,787,411
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 81.11
Shannon entropy 0.26364
G+C content 0.45472
Mean single sequence MFE -36.23
Consensus MFE -24.05
Energy contribution -25.73
Covariance contribution 1.68
Combinations/Pair 1.18
Mean z-score -2.11
Structure conservation index 0.66
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.59
SVM RNA-class probability 0.753013
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 16787291 120 + 22422827
UUGUUUGUCCGCUCGUUCUGUUUAUUUGCCUGUUUGCACUCCAAACUGUUACCCGGGAUAGUUGGCAGUGCAAAUAGACAAGACCCUGGGAUGCAUUUUCACUUUGAAAACAGAAAUCAA
...............((((((((.((((.(((((((((((((((.(((((......))))))))).))))))))))).))))....((..(.....)..))......))))))))..... ( -35.40, z-score =  -2.34, R)
>droYak2.chrX 15398773 119 + 21770863
UUGUUUGCCCGCUCGUUCGGUUUAUUUGCCUGUUUGCACUCAAAACUAUUCUCCGGGAUAGUUGGCAGUGCAGUU-GAUAAGAACCGGGGAUGCUCAUCCAUUGCGAGUACGGAAUUCAG
.((....((.(((((((((((((..(((.(...(((((((...((((((((....))))))))...)))))))..-).))))))))))((((....))))...))))))..))....)). ( -37.90, z-score =  -1.78, R)
>droEre2.scaffold_4690 7143646 113 + 18748788
UUGUUUGCCCGGUCGUUCUGUUUAUUUGCCUGUUUGCACUCAAGAGUAUUCUCCGGGAUAGUUGGCAGUGCAAAUAGAUAAGACCCUGGGAUGCACUUCCAUUGCGAAUUCAG-------
.(((...(((((..((..(((((((((((((((..(((..(..(((....)))..)..).))..)))).)))))))))))..)).)))))..)))..................------- ( -35.40, z-score =  -2.21, R)
>consensus
UUGUUUGCCCGCUCGUUCUGUUUAUUUGCCUGUUUGCACUCAAAACUAUUCUCCGGGAUAGUUGGCAGUGCAAAUAGAUAAGACCCUGGGAUGCACUUCCAUUGCGAAUACAGAA_UCA_
...............(((((...(((((((((((((((((...((((((((....))))))))...)))))))))))...........(((......)))...)))))).)))))..... (-24.05 = -25.73 +   1.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:50:45 2011