| Sequence ID | dm3.chrX |
|---|---|
| Location | 16,778,623 – 16,778,716 |
| Length | 93 |
| Max. P | 0.500000 |
| Location | 16,778,623 – 16,778,716 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 64.23 |
| Shannon entropy | 0.68578 |
| G+C content | 0.30072 |
| Mean single sequence MFE | -13.89 |
| Consensus MFE | -4.98 |
| Energy contribution | -6.34 |
| Covariance contribution | 1.36 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.16 |
| Structure conservation index | 0.36 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chrX 16778623 93 - 22422827 GAAAUGGAAGCGUUAUCAUCUGCAUAU-UAUUCGCUGUUUAAUGGAAAAACUAAAUAAAAACAAAACAAUCCUCACGUUUCCAUUUCUGCAAAU (((((((((((((........((....-.....))((((((.(......).)))))).................)))))))))))))....... ( -18.10, z-score = -3.12, R) >droYak2.chrX 15390493 92 - 21770863 GGAAUGGAAGCGAAAUCAUCUGCAUAU-UACUCACUGUUUAAUGUUAAAUUUAAA-AAAAACAAAAAAAUCCUCACGUUUCCAUUUCGGCAAAU ((((((((((((.........((((..-.((.....))...))))....(((...-.)))...............))))))))))))....... ( -16.40, z-score = -2.49, R) >droSec1.super_17 606007 93 - 1527944 GAAAUUGAAGCGUAAUUAUCUGCAUGU-UAUUUACUGUUUAAUGGAAAAAAUAAAUAAAAACAAAACAAUCCUCACGUUUCCAUUUCGGCAAUU (((((.(((((((.((((...(((.((-.....))))).))))(((.......................)))..))))))).)))))....... ( -14.00, z-score = -1.23, R) >droSim1.chrX 12964654 93 - 17042790 GAAAUUGAAGCGUAAUCAUCUGCAUGU-UAUUUACUGUUUAAUGGAAAAACAAAAUAAAAACAAAACAAUCCUCACGUUUCCAUUUCGGCAAUU (((((.(((((((...........(((-(.((((.(((((.......)))))...))))))))...........))))))).)))))....... ( -14.15, z-score = -1.26, R) >droWil1.scaffold_181150 4696112 89 - 4952429 -GGUUAGAAAAGUAUAAGUAUGCCUUUAUCUUCAUAAUUUGUUGUCAAUAGUG---AGAAUUAUACUUACAUUUCCA-UGCUAUUUUUGCAUAU -((..(...(((((((((((......))).(((((...(((....)))..)))---))..))))))))...)..))(-(((.......)))).. ( -12.50, z-score = 0.06, R) >droAna3.scaffold_13373 736 74 - 1745 GGAAGGGCAAAGCAAUUGGUUACCUAU-U-CUUAUAGUU--AUUACGAAUUU----AAAGGCA----UAUUCUUACGUUUCCAUGU-------- (((((.(..(((.(((((.((....((-(-(.((.....--..)).))))..----..)).))----.)))))).).)))))....-------- ( -8.20, z-score = 1.09, R) >consensus GAAAUGGAAGCGUAAUCAUCUGCAUAU_UAUUCACUGUUUAAUGGAAAAACUAAA_AAAAACAAAACAAUCCUCACGUUUCCAUUUCGGCAAAU ((((((((((((...............................................................))))))))))))....... ( -4.98 = -6.34 + 1.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:50:45 2011