| Sequence ID | dm3.chr2L |
|---|---|
| Location | 11,596,494 – 11,596,587 |
| Length | 93 |
| Max. P | 0.834111 |
| Location | 11,596,494 – 11,596,587 |
|---|---|
| Length | 93 |
| Sequences | 9 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 78.69 |
| Shannon entropy | 0.40652 |
| G+C content | 0.47317 |
| Mean single sequence MFE | -30.08 |
| Consensus MFE | -15.37 |
| Energy contribution | -15.88 |
| Covariance contribution | 0.51 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.11 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.85 |
| SVM RNA-class probability | 0.834111 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 11596494 93 + 23011544 -AGUCUGCGAAUGUGUUAGU----UCAUUUUUGGCCUUUUGCCAGGCCCGACACAUUGGCG-UCCUUUUAUGCGAAAAUGAGUUGAGGC--------AAUGUGUUGG- -.(((((((((.(.(((((.----......)))))).)))).)))))(((((((((((.(.-((..(((((......)))))..)).))--------))))))))))- ( -31.60, z-score = -2.71, R) >droSim1.chr2L 11403795 94 + 22036055 UAGCCUUCGAAUGUGUUAGU----UCAUUUUUGGCCUUUUGCCAGGCCCGACACAUUGGCG-UCCUUUUAUGCGAAAAUGAGUUGAGGC--------AAUGUGUUGG- ..(((...((((......))----)).....((((.....)))))))(((((((((((.(.-((..(((((......)))))..)).))--------))))))))))- ( -32.10, z-score = -2.95, R) >droSec1.super_3 6981445 94 + 7220098 UAGCCUUUGAAUGUGUUAGU----UCAUUUUUGGCCUUUUGCCAGGCCCGACACAUUGGCG-UCCUUUUAUGCGAAAAUGAGUUGAGGC--------AAUGUGUUGG- ..(((..(((((......))----)))....((((.....)))))))(((((((((((.(.-((..(((((......)))))..)).))--------))))))))))- ( -32.50, z-score = -3.21, R) >droYak2.chr2L 8018515 94 + 22324452 AUCCUUGUGGAUGUGUUAGU----UCAUUUUUGGCCUUUUGCCAGGCCCGACACAUUGGCG-UCCUUUUAUGCGAAAAUGAGUUGAGGC--------AAUGUGUUGG- ((((....))))........----........(((((......)))))((((((((((.(.-((..(((((......)))))..)).))--------))))))))).- ( -30.00, z-score = -2.09, R) >droAna3.scaffold_12916 9315570 94 - 16180835 --GAGUGGCUGUGUGUUAGUG--CUCAUUUUUGGCCUUUUGCCAGGGCCGACACAUUGGCG-UCCUUUUAUACGAAAAUGAGUUGAGGC--------AAUGUGUUGG- --(((((.(((.....)))))--)))..(((((((.....)))))))(((((((((((.(.-((..(((((......)))))..)).))--------))))))))))- ( -31.50, z-score = -2.02, R) >dp4.chr4_group3 2460279 79 + 11692001 ---------------CUGCG----CCAUUUUUGGCCUUUUGCCAGCCCCGACACAUUGGCG-UCCUUUUAUGCGAAAAUGAGUUGAGGC--------AAUGUGUUGG- ---------------....(----(((....))))............(((((((((((.(.-((..(((((......)))))..)).))--------))))))))))- ( -26.40, z-score = -2.13, R) >droPer1.super_1 3940362 79 + 10282868 ---------------CUGCG----CCAUUUUUGGCCUUUUGCCAGCCCCGACACAUUGGCG-UCCUUUUAUGCGAAAAUGAGUUGAGGC--------AAUGUGUUGG- ---------------....(----(((....))))............(((((((((((.(.-((..(((((......)))))..)).))--------))))))))))- ( -26.40, z-score = -2.13, R) >droMoj3.scaffold_6500 25275743 95 + 32352404 ------GUGUGUGUGCU------CUCAUUUUUGGCAUUUUGCCAG-CGCGCCACAUUGGCGCUCCUUUAAUGUGAAAAUGAGUUGAUGCUGAAGGCAAAUGUGCUUGG ------(..(((.((((------((((((((((((.....)))..-.(((((.....)))))...........)))))))))...........)))).)))..).... ( -28.50, z-score = -0.53, R) >droVir3.scaffold_12963 6145832 98 + 20206255 ------GUGUGUGCGCUUUGGAGCUCAUUUUUGGCAUUUUGCCAG-CGCGCCACAUUGGCG-UCCUUUAAUGUGAAAAUGAGUUGAUGCUGAAG-CAAAUGUGUUGG- ------........((((..(((((((((((((((.....)))((-.(((((.....))))-).)).......)))))))))))....)..)))-)...........- ( -31.70, z-score = -1.19, R) >consensus _____UGUGAAUGUGUUAGU____UCAUUUUUGGCCUUUUGCCAGGCCCGACACAUUGGCG_UCCUUUUAUGCGAAAAUGAGUUGAGGC________AAUGUGUUGG_ ..............................(((((.....)))))..((((((((((......((((....((........)).)))).........)))))))))). (-15.37 = -15.88 + 0.51)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:33:07 2011