| Sequence ID | dm3.chrX |
|---|---|
| Location | 16,769,276 – 16,769,363 |
| Length | 87 |
| Max. P | 0.602204 |
| Location | 16,769,276 – 16,769,363 |
|---|---|
| Length | 87 |
| Sequences | 5 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 90.22 |
| Shannon entropy | 0.16324 |
| G+C content | 0.54995 |
| Mean single sequence MFE | -30.59 |
| Consensus MFE | -29.24 |
| Energy contribution | -28.92 |
| Covariance contribution | -0.32 |
| Combinations/Pair | 1.12 |
| Mean z-score | -0.88 |
| Structure conservation index | 0.96 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.602204 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 16769276 87 - 22422827 -UUUCGGACU-GGGAUUACCCCAUCGCUUGCCCAACUUUCGGCUCCAUCCA--------GUGGAGUGAAUAAGGGAUCGGGUGAGCAAUGACCACAA -....((..(-(((.....))))..(((..(((..((((..(((((((...--------)))))))....))))....)))..))).....)).... ( -30.00, z-score = -1.37, R) >droSim1.chrX 12955396 87 - 17042790 -UUUCGGACU-GGGAUUACCCCAUCGCUUGCCCAACUUUCGGCUCCAUCCA--------GUGGAGUGAAUAAGGGAUCGGGUGAGCAAUGACCACAA -....((..(-(((.....))))..(((..(((..((((..(((((((...--------)))))))....))))....)))..))).....)).... ( -30.00, z-score = -1.37, R) >droSec1.super_17 596736 87 - 1527944 -UUCCGGACU-GGGAUUACCCCAUCGCUUGCCCAACUUUCGGCUCCAUCCA--------GUGGAGUGAAUAAGGGAUCGGGUGAGCAAUGACCACAA -....((..(-(((.....))))..(((..(((..((((..(((((((...--------)))))))....))))....)))..))).....)).... ( -30.00, z-score = -1.18, R) >droYak2.chrX 15380621 97 - 21770863 CUUUCGGAUUCGGGAUUACCCCAUCGCUUGCCCAACUCUCGGCCCCAUCCAUCCAUCCGGUGGAGUGAAAAGGGGAUCGGGUGAGCAGUGACCACAA .....((....(((....)))(((.(((..(((.(..(((.......((((((.....)))))).......)))..).)))..))).))).)).... ( -33.34, z-score = -0.13, R) >droEre2.scaffold_4690 7126031 87 - 18748788 -GUUCGGAAU-GGGGUUACCCCAUCGCUUGCCCAACUUUCGGCCCCAUCCA--------GUGGAGCGAAAAAGGGAUCGGGUGAGCAGUGACCACAA -....((.((-((((...)))))).(((..(((..((((..((.((((...--------)))).))...)))).....)))..))).....)).... ( -29.60, z-score = -0.37, R) >consensus _UUUCGGACU_GGGAUUACCCCAUCGCUUGCCCAACUUUCGGCUCCAUCCA________GUGGAGUGAAUAAGGGAUCGGGUGAGCAAUGACCACAA .....((....(((....)))(((.(((..(((..((((..(((((((...........)))))))....))))....)))..))).))).)).... (-29.24 = -28.92 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:50:43 2011