| Sequence ID | dm3.chrX |
|---|---|
| Location | 16,742,695 – 16,742,809 |
| Length | 114 |
| Max. P | 0.528943 |
| Location | 16,742,695 – 16,742,809 |
|---|---|
| Length | 114 |
| Sequences | 7 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 73.81 |
| Shannon entropy | 0.52900 |
| G+C content | 0.59451 |
| Mean single sequence MFE | -45.61 |
| Consensus MFE | -19.08 |
| Energy contribution | -21.51 |
| Covariance contribution | 2.44 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.53 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.528943 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 16742695 114 + 22422827 GAGUUGUGGAUCUCGAGAUGCUCGGCGGAUUACUAAAUCUCGUCGUGGCUACCGUGCUGGUUAAUC---UCGGCCUAAUCGAUGGCUUGGCCAGUCGGUAGCUGCUGCUCGCUUUGC ((((.(.(.(((....))).).)((((((((....)))).))))(..(((((((.((((((((...---..((((........)))))))))))))))))))..).))))....... ( -45.80, z-score = -2.78, R) >droSim1.chrX_random 4366897 114 + 5698898 GAGUUGUGGAUCUCGAGAUGCUCGGCGGAUUACUAAAUCUGGUCGUGGCUACCGUGCUUGUUAAUC---UCGGCCUAAUCGAUGGCUUGGCCAGACGGUAGCUGCUGCUCGCCUUGC (((........))).....((..((((((((....)))).(((.(..((((((((.((.((((...---..((((........)))))))).))))))))))..).)))))))..)) ( -39.80, z-score = -1.01, R) >droSec1.super_17 570687 114 + 1527944 GAGUUGUGGAUCUCGAGAUGCUCGGCGGAUUACUAAAUCUCGUCGUGGCUACCGUGCUUGUUAAUC---UCGGCCUAAUCGAGGGCUUGGCCAGACGGUAGCUGCUGCUCGCUUUGC ((((.(.(.(((....))).).)((((((((....)))).))))(..((((((((.((.(((((((---((((.....))))))..))))).))))))))))..).))))....... ( -41.20, z-score = -1.18, R) >droYak2.chrX 15354338 114 + 21770863 GUGUUGUGGAUCUCGAGAUGCUCGGCGGAUUGCUAAAUCGCGUGGUGGCUACCGUGCUGGUUAAUC---UCGGCCUGCUCGAUGGCUUGGCCAGUCGGUAGCUGCUGCUCGCCUUGC .....(.(.(((....))).).)((((((((....))))..(..(..(((((((.((((((((...---..((((........)))))))))))))))))))..)..).)))).... ( -48.80, z-score = -2.40, R) >droEre2.scaffold_4690 7100639 114 + 18748788 GAGUUGUGGAUCUCGAGAUGCUCGGCGGAUUACUAAAUCUCGUAGUGGCUACCGUGCUGCUUAGUC---UCGGCCGUAUCGAGGGCUUGGCCAGUCGGUAGCUGCUGCUCGCCUUGC (((........))).....((..((((((((....))))..((((..(((((((.((((((.((((---((((.....)))).)))).)).)))))))))))..)))).))))..)) ( -47.20, z-score = -1.84, R) >droAna3.scaffold_13334 869768 117 - 1562580 GUGUGGUGGAUCUGGAGGUGGUCGGGGGAUUACUGAACCGGGUAAUGGUCACCGGGGUGCUGGAUCGGAUGGGCUUGAUGCCCGGCUUGGCCAGGCGAUAGCUACUACUGGCCUUGC ........((((..(.(((((((....)))))))...((((..........))))....)..))))...(((((.....)))))((..((((((((....)).....))))))..)) ( -43.70, z-score = -0.23, R) >anoGam1.chrX 17248968 101 - 22145176 -----------GUCGAGCGGCUGGUCGAUCGCGUUGGUGCGGUCCU--CCACCUGGUCGGUGGCCA--CCGCGUCCACCCGGCGCAUUGGCC-GCCGGUUACUGCUGCUGGGAGGGA -----------.((.(((((((((..(((((((....)))))))..--)))..((..(((((((((--..(((((.....)))))..)))))-))))..))..)))))).))..... ( -52.80, z-score = -1.29, R) >consensus GAGUUGUGGAUCUCGAGAUGCUCGGCGGAUUACUAAAUCUCGUCGUGGCUACCGUGCUGGUUAAUC___UCGGCCUAAUCGAUGGCUUGGCCAGUCGGUAGCUGCUGCUCGCCUUGC .......................((((((((....))))..((.(((((((((...(((((((........((((........)))))))))))..))))))))).)).)))).... (-19.08 = -21.51 + 2.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:50:40 2011