| Sequence ID | dm3.chrX |
|---|---|
| Location | 16,741,900 – 16,742,003 |
| Length | 103 |
| Max. P | 0.719420 |
| Location | 16,741,900 – 16,742,003 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 66.50 |
| Shannon entropy | 0.64787 |
| G+C content | 0.64746 |
| Mean single sequence MFE | -34.77 |
| Consensus MFE | -13.27 |
| Energy contribution | -16.67 |
| Covariance contribution | 3.40 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.38 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.719420 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 16741900 103 - 22422827 GCAGCUAAGUCCGCGGAUGCCGCCGGUCCGG---CUACCGGUCCGGC-CUACGUCUAUCCGGCGCCCUAUGCCCCCUGGCUGCUCUACCCCUCUAACGACACGGUGG (((((((.......(((((..(((((.((((---...)))).)))))-...)))))....((((.....))))...))))))).(((((..((....))...))))) ( -42.60, z-score = -1.75, R) >droSec1.super_17 569892 103 - 1527944 GCAGCUAAGUCCGCGGAUGCCGCCGGUCCGC---AUACCGGUCCGGC-CUACGUCUAUCCGGCGCCCUAUACCCCUUGGCUGCUCUACCCCUCUAACGACACGGUGG (((((((((.....((.(((((((((.(((.---....))).)))))-....(......))))).)).......))))))))).(((((..((....))...))))) ( -40.80, z-score = -2.29, R) >droYak2.chrX 15353540 106 - 21770863 GCAGCUAAGUCCGCGGAUGCCGCCGGUCCGGAUACUACCGGUCCGGC-CUACGUCUAUCCGGCGCCCUAUGCCCCCUGGCUGCUCUACCCCACUAACGACACGGUGG (((((((.......(((((..(((((.((((......)))).)))))-...)))))....((((.....))))...)))))))......(((((........))))) ( -42.80, z-score = -1.81, R) >droEre2.scaffold_4690 7099844 103 - 18748788 GCAGCUAAGUCCGCGGAUGCCGCCGGUCCGG---AUACCGGUCCGGC-CUACGUCUAUCCGGCGCCCUAUGCCCCCUGGCUGCUCUACCCCUCUAACGACACGGUGG (((((((.......(((((..(((((.((((---...)))).)))))-...)))))....((((.....))))...))))))).(((((..((....))...))))) ( -42.60, z-score = -1.93, R) >droWil1.scaffold_181096 4652723 82 + 12416693 ---------------GGAGUCGGCGGUG------GUGGCACGCCCAC-AUAUAUCUACCCGUCACCCUAUGCACCGUGGCUGCUCUAUCCC---AACGAAACGUUGG ---------------((((((.((((((------((((.....))))-...........(((......))))))))).)..)))))...((---((((...)))))) ( -24.40, z-score = 0.12, R) >triCas2.ChLG4 7178768 85 - 13894384 ----CCGGGUCCGUACCUCCCGCCUAACCAU-CAAUAUUCGUCCAACGCUACUCCCGGGCAAC-CUCCGUUCCCAAUACCUGC-GUACCCUU--------------- ----..((((.((((................-.......((.....))........(((.(((-....))))))......)))-).))))..--------------- ( -15.40, z-score = -0.85, R) >consensus GCAGCUAAGUCCGCGGAUGCCGCCGGUCCGG___AUACCGGUCCGGC_CUACGUCUAUCCGGCGCCCUAUGCCCCCUGGCUGCUCUACCCCUCUAACGACACGGUGG (((((((((..((((((((..(((((.(((........))).)))))........))))).)))..))........)))))))........................ (-13.27 = -16.67 + 3.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:50:39 2011