| Sequence ID | dm3.chrX |
|---|---|
| Location | 16,725,138 – 16,725,245 |
| Length | 107 |
| Max. P | 0.682775 |
| Location | 16,725,138 – 16,725,245 |
|---|---|
| Length | 107 |
| Sequences | 5 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 91.81 |
| Shannon entropy | 0.13520 |
| G+C content | 0.42002 |
| Mean single sequence MFE | -31.64 |
| Consensus MFE | -25.08 |
| Energy contribution | -25.32 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.79 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.682775 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 16725138 107 + 22422827 AUUUGAAUGAUUUAAUGCGCUUGUUAAU----UUAUA--AAGUUUGCUUUCUGGGUGAGGACCCAAUUUGGGAA---GACUCCCCGACAUCGAUUUGCGUAAGAAUCGGGGCGCAU ..............(((((((((((...----....(--(((....))))..(((.(((..(((.....)))..---..))))))))))(((((((......)))))))))))))) ( -30.60, z-score = -1.54, R) >droEre2.scaffold_4690 7083165 111 + 18748788 AUUUGAAUGAUUUAAUGCGCCUGUUAAUAUACUCGUAUUAAGUUUGCUUUCUGGGUGAGGACCCAAUUUGGGAC---GACUCC--GACACCGAUUUACGUAAGAAUCGGGGUGCAU ..............(((((((((((....((((((....(((....)))..)))))).((((((.....)))..---...)))--))))(((((((......)))))))))))))) ( -30.70, z-score = -1.60, R) >droYak2.chrX 15330384 108 + 21770863 AUUUGAAUGAUUUAAUGCGCUUGUUAAU----UCAUA--AAGUUUGCUUUCUGGGUGAGGACCCAAUUUGGGUCUUCGACUGC--GACACCGAUUUACGUAAGAAUCGGGGCGCAU ..............(((((((((((.((----(((.(--(((....)))).)))))((((((((.....))))))))......--))))(((((((......)))))))))))))) ( -38.70, z-score = -4.23, R) >droSec1.super_17 553297 106 + 1527944 AUUUGAAUGAUUUAAUGCGCUUGUUAAU----UUAUA--AAGUUUGCUUUCUGGGUGAGGACCCAAUUUGGGAA---GACUCCC-GACAUCGAUUUGCGUAAGAAUCGGGGCGCAU ..............(((((((((((...----.....--............(((((....)))))....((((.---...))))-))))(((((((......)))))))))))))) ( -29.10, z-score = -1.34, R) >droSim1.chrX 12908832 106 + 17042790 AUUUGAAUGAUUUAAUGCGCUUGUUAAU----UUAUA--AAGUUUGCUUUCUGGGUGAGGACCCAAUUUGGGAA---GACUCCC-GACAUCGAUUUGCGUAAGAAUCGGGGCGCAU ..............(((((((((((...----.....--............(((((....)))))....((((.---...))))-))))(((((((......)))))))))))))) ( -29.10, z-score = -1.34, R) >consensus AUUUGAAUGAUUUAAUGCGCUUGUUAAU____UUAUA__AAGUUUGCUUUCUGGGUGAGGACCCAAUUUGGGAA___GACUCCC_GACAUCGAUUUGCGUAAGAAUCGGGGCGCAU ..............(((((((((((..........................(((((....)))))....((((.......)))).))))(((((((......)))))))))))))) (-25.08 = -25.32 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:50:35 2011