| Sequence ID | dm3.chrX |
|---|---|
| Location | 16,724,773 – 16,724,864 |
| Length | 91 |
| Max. P | 0.823787 |
| Location | 16,724,773 – 16,724,864 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 83.20 |
| Shannon entropy | 0.26721 |
| G+C content | 0.43271 |
| Mean single sequence MFE | -22.34 |
| Consensus MFE | -18.34 |
| Energy contribution | -18.62 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.82 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.81 |
| SVM RNA-class probability | 0.823787 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 16724773 91 - 22422827 CAGUUGGCAUUACAAUUGCAAAUCCAUUCCAUUGUCUGA------------------UCGACUUCGAGGUUUUCACAUCUCGAAGUUCGCCGCAUUCUAAUUUGCAGAG ((((((......))))))................(((..------------------.((((((((((((......))))))))).)))..(((........)))))). ( -22.00, z-score = -1.98, R) >droSim1.chrX 12905514 88 - 17042790 CAGUUGGCAAAGCAAUUGCUAUU---CUCCUUUGUUUGA------------------UCGACUUCGAGGAUUUUACCUCUCGAAGUUCGCCGCAUUAUCACUUGCAGAG .....(((..(((....)))...---.............------------------..((((((((((........)))))))))).)))(((........))).... ( -23.10, z-score = -1.83, R) >droSec1.super_17 552961 88 - 1527944 CAGUUGGCAUUACAAUUGCAAAU---UUCCAUUGUCUGA------------------UCGACUUCGAGGUUUUCACAUUUCGAAGUUCGCCGCAUUCUCAUUUGCAGAG .(((((......)))))((((((---......(((....------------------.((((((((((((......))))))))).)))..))).....)))))).... ( -19.60, z-score = -1.31, R) >droYak2.chrX 15330012 106 - 21770863 CAGUUGGAAUUACAAUUGCAAAU---UUCCAUUGUCUGAUCGGCUUCGGCUUUGGCUUCGACUUCGAGGUUUUCACAUCUCCAAGUUCGCCGCAUUCCCAUUUGCAGAG .(((((......)))))((((((---......(((......(((....)))..(((...(((((.(((((......))))).))))).)))))).....)))))).... ( -25.80, z-score = -0.93, R) >droEre2.scaffold_4690 7082825 88 - 18748788 CAGUUUGAAUUACAAUUGCAAAU---UUCCAUUGUCUGA------------------UCGACUUCGAGGUUUUCACAUCUCGAAGUUCGCCGCAUUCUCAUUUGCAGAG ...............((((((((---......(((....------------------.((((((((((((......))))))))).)))..))).....)))))))).. ( -21.20, z-score = -1.97, R) >consensus CAGUUGGCAUUACAAUUGCAAAU___UUCCAUUGUCUGA__________________UCGACUUCGAGGUUUUCACAUCUCGAAGUUCGCCGCAUUCUCAUUUGCAGAG ((((((......))))))................(((.....................((((((((((((......))))))))).)))..(((........)))))). (-18.34 = -18.62 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:50:34 2011