Locus 14970

Sequence ID dm3.chrX
Location 16,722,833 – 16,722,924
Length 91
Max. P 0.846578
window20630

overview

Window 0

Location 16,722,833 – 16,722,924
Length 91
Sequences 7
Columns 92
Reading direction reverse
Mean pairwise identity 73.29
Shannon entropy 0.54618
G+C content 0.38739
Mean single sequence MFE -21.46
Consensus MFE -8.42
Energy contribution -9.10
Covariance contribution 0.68
Combinations/Pair 1.35
Mean z-score -2.01
Structure conservation index 0.39
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.90
SVM RNA-class probability 0.846578
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 16722833 91 - 22422827
GAAUGCUAACCAAUGUUAAUUGGACUCUAAACGAGAAAUGCUUAGCAAAUAUUUGAUUUUCACCGUCUGCGCCUCAGUGACGCAGUUGAUU-
...(((((((((((....))))).(((.....)))......))))))................((.(((((.(.....).))))).))...- ( -20.30, z-score =  -1.45, R)
>droAna3.scaffold_13334 849395 79 + 1562580
GAAUGCUAACCAAUGUUAAUUGGACUCCGGACGAGAAAUGCUUAACAAAUAUUUAGUUUUUGUGACGCAGUUUUCGUUU-------------
.........(((((....))))).....(((((((((.(((...(((((.........)))))...))).)))))))))------------- ( -19.20, z-score =  -2.40, R)
>droEre2.scaffold_4690 7080896 91 - 18748788
GAAUGCUAACCAAUGUUAAUUGGACUCUAAACGAGAAAUGCUUAGCAAACAUAUGAUUUUCACCGUCUGCUUCUCAGUGACGCAGUUGAUU-
...(((((((((((....))))).(((.....)))......))))))................((.((((.((.....)).)))).))...- ( -19.60, z-score =  -1.38, R)
>droYak2.chrX 15328094 91 - 21770863
GAAUGCUAACCAAUGUUAAUUGGACUCUAAACGAGAAAUGCUUAGCAAAUAUUUGAUUUUCACCGUCUGCGCCUCAGUGACGCAGUUGAUU-
...(((((((((((....))))).(((.....)))......))))))................((.(((((.(.....).))))).))...- ( -20.30, z-score =  -1.45, R)
>droSec1.super_17 551024 91 - 1527944
GAAUGCUAACCAAUGUUAAUUGGACUCUAAACGAGAAAUGCUUAGCAAAUAUUUGGUUUUCACCGUCUGCGCCCAAGUGACGCAGUUGAUU-
...(((((((((((....))))).(((.....)))......)))))).......(((....)))..((((((......).)))))......- ( -20.00, z-score =  -0.99, R)
>droSim1.chrX 12903586 91 - 17042790
GAAUGCUAACCAAUGUUAAUUGGACUCUAAACGAGAAAUGCUUAGCAAAUAUUUGAUUUUCACCGUCUGCGCCCAAGUGACGCAGUUGAUU-
...(((((((((((....))))).(((.....)))......))))))................((.((((((......).))))).))...- ( -19.30, z-score =  -1.36, R)
>droMoj3.scaffold_6473 4369532 87 + 16943266
AAAUGCU--CCAAAGAUAGUU---UUACAUGUGAAUCAUCCCAGCUAUAUAGUUGGGAUGCAUAGUAGAAGAUCGUCUUAGGAGAUCGACUA
.....((--((.((((..(((---((...((((...((((((((((....))))))))))))))....)))))..)))).))))........ ( -31.50, z-score =  -5.03, R)
>consensus
GAAUGCUAACCAAUGUUAAUUGGACUCUAAACGAGAAAUGCUUAGCAAAUAUUUGAUUUUCACCGUCUGCGCCUCAGUGACGCAGUUGAUU_
...(((((((((((....))))).(((.....)))......))))))................((((.((......)))))).......... ( -8.42 =  -9.10 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:50:34 2011