| Sequence ID | dm3.chr2L |
|---|---|
| Location | 11,578,053 – 11,578,108 |
| Length | 55 |
| Max. P | 0.880764 |
| Location | 11,578,053 – 11,578,108 |
|---|---|
| Length | 55 |
| Sequences | 8 |
| Columns | 63 |
| Reading direction | forward |
| Mean pairwise identity | 74.92 |
| Shannon entropy | 0.48646 |
| G+C content | 0.52697 |
| Mean single sequence MFE | -17.00 |
| Consensus MFE | -10.00 |
| Energy contribution | -10.14 |
| Covariance contribution | 0.14 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.05 |
| SVM RNA-class probability | 0.880764 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 11578053 55 + 23011544 --------GGCACAAAACGAGCCAACUGCAUCACUAGGCUUUGGGCCAUGGCUCCAUGCCAAU --------((((......(((((.............)))))(((((....)).)))))))... ( -16.82, z-score = -1.04, R) >droYak2.chr2L 7999577 63 + 22324452 GGCACAAAACGACCCAACGAGCCAACUGCAUCACGAGGCUUUGGGCCAUGGCUCGAUGCCAAU (((((.....)......(((((((.(........).(((.....))).))))))).))))... ( -19.20, z-score = -1.56, R) >droEre2.scaffold_4929 12809592 63 - 26641161 GGCACAAAACGACCCAACGAGCCAACUGCAUCACGAGGCUUUGGGCCAUGGCUCGAUGCCAAU (((((.....)......(((((((.(........).(((.....))).))))))).))))... ( -19.20, z-score = -1.56, R) >droSec1.super_3 6963285 55 + 7220098 --------GGCACAAAACGAGCCAACUGCAUCACGAGGCUUUGGGCCAUGGAUCGAUGCCAAU --------(((.(.....).)))....(((((.((.(((.....))).))....))))).... ( -14.70, z-score = -0.70, R) >droSim1.chr2L 11384629 55 + 22036055 --------GGCACAAAACGAGCCAACUGGAUCACGAGGCUUUGGGCCAUGGCUCGAUGCCAAU --------((((.....(((((((..((.....)).(((.....))).))))))).))))... ( -20.90, z-score = -2.80, R) >droAna3.scaffold_12916 9295334 54 - 16180835 --------GGCGCUCAACGAGCCAACUGCAUCACG-GGCUUUGGGCCAUGGCUCUCUGCCAAU --------.(.(((((..(((((............-))))))))))).((((.....)))).. ( -17.10, z-score = -0.59, R) >dp4.chr4_group3 2446750 51 + 11692001 ------------AAAAAAAAAAAAACCAAAAGAGAAGGCUUUGGGCCAUGGCUCUCUGCCAAU ------------........................(((...((((....))))...)))... ( -12.30, z-score = -1.39, R) >droWil1.scaffold_180772 5004239 53 - 8906247 --------AAUUCGAAAGAAUAAAACUGCAUCAGA--GCUUUGGGCCAUGGCUUGAUGCCAAU --------.((((....))))......((((((.(--(((.((...)).)))))))))).... ( -15.80, z-score = -2.30, R) >consensus ________GGCACAAAACGAGCCAACUGCAUCACGAGGCUUUGGGCCAUGGCUCGAUGCCAAU ....................................(((...((((....))))...)))... (-10.00 = -10.14 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:33:05 2011