Locus 14969

Sequence ID	dm3.chrX
Location	16,720,319 – 16,720,410
Length	91
Max. P	0.988538

overview

Window 9

Location	16,720,319 – 16,720,410
Length	91
Sequences	4
Columns	91
Reading direction	reverse
Mean pairwise identity	95.97
Shannon entropy	0.06448
G+C content	0.42033
Mean single sequence MFE	-15.95
Consensus MFE	-15.39
Energy contribution	-15.45
Covariance contribution	0.06
Combinations/Pair	1.04
Mean z-score	-2.57
Structure conservation index	0.96
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	2.33
SVM RNA-class probability	0.988538
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chrX 16720319 91 - 22422827
UCACUUGAUGCGAUCGAUCUGUUUUACCACUCUCUAAACCAGAUCUGCCCAUUUAUACUCUCUUGUUCCAUGGAAAUUGCUCUCAUUUUCG
.....(((.(((((.((((((.((((........)))).))))))...((((....((......))...))))..)))))..)))...... ( -16.30, z-score =  -2.86, R)
>droSec1.super_17 548550 91 - 1527944
UCACUUGAUGCGAUCGAUCUGCUUUACCACUCUCUAAGCCAGAUCUGCCCAUUUAUACUCUCUUGUUCCAUGGAAAUUGCUCUCUUUUUCG
......((.(((((.(((((((((...........))).))))))...((((....((......))...))))..)))))))......... ( -16.10, z-score =  -2.15, R)
>droYak2.chrX 15325678 91 - 21770863
UCACUUGAUGCGAUCGAUCUGCUUUCCAACUCUCUAAACCAGAUCUGCCCAUUUAUACUCUCGUGUUCCAUGGAAAUUGCUCUCUUUUUCG
......((.(((((.((((((.(((..........))).))))))...((((..((((....))))...))))..)))))))......... ( -15.50, z-score =  -2.15, R)
>droEre2.scaffold_4690 7077102 91 - 18748788
UCACUUGAUGCGAUCGAUCUGUUUUACCACUCCCUAAACCAGAUCUGCCCAUUUAUACUCUCUUGUUCCAUGGAAAUUGCUCUCUUUUUCG
......((.(((((.((((((.((((........)))).))))))...((((....((......))...))))..)))))))......... ( -15.90, z-score =  -3.10, R)
>consensus
UCACUUGAUGCGAUCGAUCUGCUUUACCACUCUCUAAACCAGAUCUGCCCAUUUAUACUCUCUUGUUCCAUGGAAAUUGCUCUCUUUUUCG
......((.(((((.((((((.((((........)))).))))))...((((....((......))...))))..)))))))......... (-15.39 = -15.45 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:50:33 2011