| Sequence ID | dm3.chrX |
|---|---|
| Location | 16,713,929 – 16,714,028 |
| Length | 99 |
| Max. P | 0.870197 |
| Location | 16,713,929 – 16,714,027 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 97.14 |
| Shannon entropy | 0.05157 |
| G+C content | 0.51224 |
| Mean single sequence MFE | -33.88 |
| Consensus MFE | -33.22 |
| Energy contribution | -33.14 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.98 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.00 |
| SVM RNA-class probability | 0.870197 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 16713929 98 + 22422827 CCCAACGAAUCGAUUCGUUUGGCAUCCGAAAUGCAAAUUGGAUUGGUGCCGCCAUUUGAUUGGGCUUGGGCAUGCCCGAUCAACCAUGAUCUAUGGCC ...((((((....)))))).(((((((((........)))))....))))(((((((((((((((........)))))))))).........))))). ( -33.20, z-score = -1.11, R) >droSim1.chrX 12893898 98 + 17042790 CCCACCGAAUCGAUUCGUUUGGCAUCCGAAAUGCAAAUUGGAUUGGUGCCGCCAUUUGAUUGGGCUUGGGCAUGCCCGAUCAACCAUGAUCUAUGGCC ..((((((.((((((.((((((...))))...)).)))))).))))))..(((((((((((((((........)))))))))).........))))). ( -33.80, z-score = -1.14, R) >droSec1.super_17 542107 98 + 1527944 CCCACCGAAUCGAUUCGUUUGGCAUCCGAAAUGCAAAUUGGAUUGGUGCCGCCAUUUGAUUGGGCUUGGACAUGCCCGAUCAACCAUGAUCUAUGGCC ..((((((.((((((.((((((...))))...)).)))))).))))))..(((((((((((((((........)))))))))).........))))). ( -33.80, z-score = -1.75, R) >droYak2.chrX 15319551 98 + 21770863 CCCACCGAAUCGAUUCGUUUGGCAUCCGAAAUGCAAAUCGGAUUGGUGCCGCCAUUUGAUUGGGCUUGGGCAUGCCCAAUCAACCAUGAUCUAUGGCC ..((((((.((((((.((((((...))))...)).)))))).))))))..(((((((((((((((........)))))))))).........))))). ( -36.20, z-score = -1.89, R) >droEre2.scaffold_4690 7070765 98 + 18748788 CCCACCGAAUCGAUUCGUUUGGCAUCCGAAAUGCAAAUUGAAUUGGUGCCGCCAAUUGAUUGGGCUUGGGUAUGCCCGAUCAACCAUGAUCUAUGGCC ..((((((.((((((.((((((...))))...)).)))))).))))))..((((.((((((((((........))))))))))..........)))). ( -32.40, z-score = -1.48, R) >consensus CCCACCGAAUCGAUUCGUUUGGCAUCCGAAAUGCAAAUUGGAUUGGUGCCGCCAUUUGAUUGGGCUUGGGCAUGCCCGAUCAACCAUGAUCUAUGGCC ..((((((.((((((.((((((...))))...)).)))))).))))))..(((((((((((((((........)))))))))).........))))). (-33.22 = -33.14 + -0.08)
| Location | 16,713,930 – 16,714,028 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 97.14 |
| Shannon entropy | 0.05157 |
| G+C content | 0.50204 |
| Mean single sequence MFE | -33.88 |
| Consensus MFE | -33.22 |
| Energy contribution | -33.14 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.98 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.82 |
| SVM RNA-class probability | 0.827982 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 16713930 98 + 22422827 CCAACGAAUCGAUUCGUUUGGCAUCCGAAAUGCAAAUUGGAUUGGUGCCGCCAUUUGAUUGGGCUUGGGCAUGCCCGAUCAACCAUGAUCUAUGGCCA ..((((((....)))))).(((((((((........)))))....))))(((((((((((((((........)))))))))).........))))).. ( -33.20, z-score = -1.02, R) >droSim1.chrX 12893899 98 + 17042790 CCACCGAAUCGAUUCGUUUGGCAUCCGAAAUGCAAAUUGGAUUGGUGCCGCCAUUUGAUUGGGCUUGGGCAUGCCCGAUCAACCAUGAUCUAUGGCCA .((((((.((((((.((((((...))))...)).)))))).))))))..(((((((((((((((........)))))))))).........))))).. ( -33.80, z-score = -1.04, R) >droSec1.super_17 542108 98 + 1527944 CCACCGAAUCGAUUCGUUUGGCAUCCGAAAUGCAAAUUGGAUUGGUGCCGCCAUUUGAUUGGGCUUGGACAUGCCCGAUCAACCAUGAUCUAUGGCCA .((((((.((((((.((((((...))))...)).)))))).))))))..(((((((((((((((........)))))))))).........))))).. ( -33.80, z-score = -1.63, R) >droYak2.chrX 15319552 98 + 21770863 CCACCGAAUCGAUUCGUUUGGCAUCCGAAAUGCAAAUCGGAUUGGUGCCGCCAUUUGAUUGGGCUUGGGCAUGCCCAAUCAACCAUGAUCUAUGGCCA .((((((.((((((.((((((...))))...)).)))))).))))))..(((((((((((((((........)))))))))).........))))).. ( -36.20, z-score = -1.79, R) >droEre2.scaffold_4690 7070766 98 + 18748788 CCACCGAAUCGAUUCGUUUGGCAUCCGAAAUGCAAAUUGAAUUGGUGCCGCCAAUUGAUUGGGCUUGGGUAUGCCCGAUCAACCAUGAUCUAUGGCCA .((((((.((((((.((((((...))))...)).)))))).))))))..((((.((((((((((........))))))))))..........)))).. ( -32.40, z-score = -1.33, R) >consensus CCACCGAAUCGAUUCGUUUGGCAUCCGAAAUGCAAAUUGGAUUGGUGCCGCCAUUUGAUUGGGCUUGGGCAUGCCCGAUCAACCAUGAUCUAUGGCCA .((((((.((((((.((((((...))))...)).)))))).))))))..(((((((((((((((........)))))))))).........))))).. (-33.22 = -33.14 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:50:30 2011