| Sequence ID | dm3.chrX |
|---|---|
| Location | 16,694,043 – 16,694,124 |
| Length | 81 |
| Max. P | 0.748884 |
| Location | 16,694,043 – 16,694,124 |
|---|---|
| Length | 81 |
| Sequences | 5 |
| Columns | 81 |
| Reading direction | reverse |
| Mean pairwise identity | 94.20 |
| Shannon entropy | 0.10052 |
| G+C content | 0.35802 |
| Mean single sequence MFE | -14.40 |
| Consensus MFE | -13.00 |
| Energy contribution | -12.44 |
| Covariance contribution | -0.56 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.90 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.58 |
| SVM RNA-class probability | 0.748884 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 16694043 81 - 22422827 GUUCAUUUCACAGUUAACUGCGCUCAGGUGGGCAAAUAACACAAAUUAUCGGAAUAACUCAAAUAUUGGGGGUAUACCAUA (((((((((.(((....))).)...)))))))).................((.(((.((((.....))))..))).))... ( -13.80, z-score = -1.01, R) >droSim1.chrX 12873651 81 - 17042790 GUUCAUUUCACAGUUAACUGCGCUCAGGUGAGCAAAUAACACAAAUUAUCGAAAUAACUCAAAUAUUGGGGGUAUACUACA ....(((((.(((....))).((((....)))).................)))))..((((.....))))........... ( -12.90, z-score = -1.45, R) >droSec1.super_17 523125 81 - 1527944 GUUCAUUUCACAGUUAACUGCGCUCAGGUGAGCAAAUAACACAAAUUAUCGAAAUAACUCAAAUAUUGGGGGUAUACUACA ....(((((.(((....))).((((....)))).................)))))..((((.....))))........... ( -12.90, z-score = -1.45, R) >droYak2.chrX 15300376 81 - 21770863 GUUUAUUUCACAGUUAACUGCGCUCAGGUGAGCAAAUAACACAAAUUAACGGAAUAUCUCAAAUAUUGAGGGUAUACUAUA ...((((((.(((....))).((((....)))).................))))))(((((.....))))).......... ( -14.70, z-score = -1.80, R) >droEre2.scaffold_4690 7050982 81 - 18748788 GUUUAUUUCACAGUUAACUGCGCUCAGGUGAGCAAAUAACACAUAUUAACGGAAUACCUCAAAUAUUGGGGGUAUACUAUA ((((((((..(((....))).((((....)))))))))).))........((.(((((((........))))))).))... ( -17.70, z-score = -2.39, R) >consensus GUUCAUUUCACAGUUAACUGCGCUCAGGUGAGCAAAUAACACAAAUUAUCGGAAUAACUCAAAUAUUGGGGGUAUACUAUA ....(((((.(((....))).((((....)))).................)))))..((((.....))))........... (-13.00 = -12.44 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:50:29 2011