| Sequence ID | dm3.chrX |
|---|---|
| Location | 16,675,146 – 16,675,236 |
| Length | 90 |
| Max. P | 0.944049 |
| Location | 16,675,146 – 16,675,236 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 87.81 |
| Shannon entropy | 0.20121 |
| G+C content | 0.45665 |
| Mean single sequence MFE | -30.12 |
| Consensus MFE | -22.40 |
| Energy contribution | -22.88 |
| Covariance contribution | 0.48 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.59 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.50 |
| SVM RNA-class probability | 0.944049 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 16675146 90 - 22422827 --------UGGCUGGCUGGCUUUCAAUCUGGCUAAAAGUCUAAUGGCUUUUUGGCCGUUAUUUUGUUAUUUUGGCCAACCUGUUUGACGGCCCAUUAC --------.....(((((.....((...(((((((((..(((((((((....))))))))....)...)))))))))...)).....)))))...... ( -27.30, z-score = -1.89, R) >droYak2.chrX 15282091 85 - 21770863 ------------UGGCUGGC-UUCAAGCUGGCUAAAAGUCUAAUGGCUUUUUGGCCGUUAUUUUGUUAUUUUGGCCAACCUGUUUGACGGCCCAUUAC ------------.(((((..-.(((((((((((((((..(((((((((....))))))))....)...)))))))))....)))))))))))...... ( -30.00, z-score = -3.05, R) >droEre2.scaffold_4690 7032444 84 - 18748788 ------------UGGCUGGC-UUCGACCUGGCUAAAAGCCUAAUGGCUUUUUGGCCGCUAUUUUGUAAUUUUGGGCAACCUGUUUGGCGG-CCAUUAC ------------((((..(.-......)..))))((((((....)))))).(((((((((......(((...((....)).)))))))))-))).... ( -31.50, z-score = -2.58, R) >droSec1.super_17 503730 98 - 1527944 UGGUUGGUUGGCUGGCUGGCUUUCAUUCUGGCUAAAAGUCUAAUGGCUUUUUGGCCGUUAUUUUGUUAUUUCGGCCAACCUGUUUGACGGCCCAUUAC .(((..(....)..)))((((.(((..(.((..(((((((....)))))))((((((..((......))..)))))).)).)..))).))))...... ( -32.90, z-score = -2.68, R) >droSim1.chrX 12854113 90 - 17042790 --------UGGCUGGUUGGCUUUCAUUCUGGCUAAAAGUCUAAUGGCUUUUUGGCCGUUAUUUUGUUAUUUCGGCCAACCUGUUUGACGGCCCAUUAC --------....((((.((((.(((..(.((..(((((((....)))))))((((((..((......))..)))))).)).)..))).)))).)))). ( -28.90, z-score = -2.73, R) >consensus ________UGGCUGGCUGGCUUUCAAUCUGGCUAAAAGUCUAAUGGCUUUUUGGCCGUUAUUUUGUUAUUUUGGCCAACCUGUUUGACGGCCCAUUAC .................((((.((((.(.((..(((((((....)))))))((((((..((......))..)))))).)).).)))).))))...... (-22.40 = -22.88 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:50:27 2011