| Sequence ID | dm3.chrX |
|---|---|
| Location | 16,674,409 – 16,674,467 |
| Length | 58 |
| Max. P | 0.986787 |
| Location | 16,674,409 – 16,674,467 |
|---|---|
| Length | 58 |
| Sequences | 6 |
| Columns | 69 |
| Reading direction | forward |
| Mean pairwise identity | 73.62 |
| Shannon entropy | 0.46447 |
| G+C content | 0.38235 |
| Mean single sequence MFE | -11.47 |
| Consensus MFE | -6.73 |
| Energy contribution | -7.57 |
| Covariance contribution | 0.83 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.27 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.25 |
| SVM RNA-class probability | 0.986787 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 16674409 58 + 22422827 AUAUUCUUCAACUCGGCAAAUGCUGAGUGUC--UCUGUUUUUUAGUAUCUCCACAUAUCU--------- ..........(((((((....)))))))...--...........................--------- ( -10.30, z-score = -2.46, R) >droAna3.scaffold_13248 4302093 69 + 4840945 ACAUUCUCCAAGUCAGCAAAGACAAAAAAGAGGUCUCUUUCCCAACGUCUCUGCCGGCCAGAGGCGUAU ...........(((......)))...(((((....)))))....(((((((((.....))))))))).. ( -17.30, z-score = -2.03, R) >droYak2.chrX 15281207 58 + 21770863 AUAUUCUUCAACUCGGCAAAUGCUGAGUGUC--UCUGUUUUUUAGUAUCUCCACGUAUUU--------- ..........(((((((....)))))))...--...........................--------- ( -10.30, z-score = -2.30, R) >droEre2.scaffold_4690 7031811 54 + 18748788 AGAUUCUUCAACUCGGCAAAUGCUGAGUAUC--UCUGUUUUUUAGUAUCUCUAUAU------------- ..........(((((((....)))))))...--.......................------------- ( -10.30, z-score = -2.02, R) >droSec1.super_17 502968 55 + 1527944 AUAUUCUUCAACUCGGCAAAUGCUGAGUGUC--UCUGU---UUAGUAUCUCCACAUAUCU--------- ..........(((((((....)))))))...--.....---...................--------- ( -10.30, z-score = -2.36, R) >droSim1.chrX 12853344 58 + 17042790 AUAUUCUUCAACUCGGCAAAUGCUGAGUGUC--UCUGUUUUUUAGUAUCUCCACAUAUCU--------- ..........(((((((....)))))))...--...........................--------- ( -10.30, z-score = -2.46, R) >consensus AUAUUCUUCAACUCGGCAAAUGCUGAGUGUC__UCUGUUUUUUAGUAUCUCCACAUAUCU_________ ..........(((((((....)))))))......................................... ( -6.73 = -7.57 + 0.83)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:50:26 2011