Locus 14962

Sequence ID dm3.chrX
Location 16,673,644 – 16,673,734
Length 90
Max. P 0.666853
window20620

overview

Window 0

Location 16,673,644 – 16,673,734
Length 90
Sequences 5
Columns 99
Reading direction reverse
Mean pairwise identity 79.85
Shannon entropy 0.34955
G+C content 0.37505
Mean single sequence MFE -15.45
Consensus MFE -9.14
Energy contribution -9.58
Covariance contribution 0.44
Combinations/Pair 1.08
Mean z-score -1.85
Structure conservation index 0.59
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.38
SVM RNA-class probability 0.666853
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 16673644 90 - 22422827
CAGCCUACUUGGAUUAC---------UUAUAUUCAUUACAACUUCCGAAUAGGGUCAUUUAUUUUGCUUUAUCUUCGAGCGACCCUCUUGACAUUUCUU
...((((.(((((....---------.................))))).))))((((......((((((.......))))))......))))....... ( -17.40, z-score =  -2.66, R)
>droYak2.chrX 15280490 86 - 21770863
---CCAUUAUUCAUUU----------CAUUAUUCAUUACAACUUCCGAAGAGGGUCAUUUAUUUCGCUUUAUCUGCGUACGACCCUCUUGACAUUUCUU
---.............----------.....................(((((((((........(((.......)))...))))))))).......... ( -16.80, z-score =  -3.62, R)
>droEre2.scaffold_4690 7031069 99 - 18748788
CAGUUUGCUUGCAUCUCCCAGCCAUAUUAUAUUGAUUACAACUUCCGAAUAGGGUCAUUUAUUUCGCUUUAUCUUCCAGCGACCCUCUUGACAUUUCUU
((((......((........))........))))..........((.....))((((......(((((.........)))))......))))....... ( -10.94, z-score =   0.57, R)
>droSec1.super_17 502241 90 - 1527944
CAGUUCAGUUGGAAUAC---------UUAUGUUCAUUACAACUUCCGAAUAGUGUCAUUUAUUUCGCUUUAUCUUCGAGCGACCCUCUUGACAUUUCUU
..((((((((((((((.---------...)))))....)))))...))))(((((((......((((((.......))))))......))))))).... ( -18.40, z-score =  -2.49, R)
>droSim1.chrX 12852639 80 - 17042790
----------GGAUUGC---------UUAUGUUCAUUACAACUUCCGAAUAGGGUCAUUUAUUUCGCUUUAUCUUCGAGCGACCCUCUUGACAUUUCUU
----------(((....---------...(((.....)))...)))(((....((((......((((((.......))))))......))))..))).. ( -13.70, z-score =  -1.03, R)
>consensus
CAGCCUACUUGGAUUAC_________UUAUAUUCAUUACAACUUCCGAAUAGGGUCAUUUAUUUCGCUUUAUCUUCGAGCGACCCUCUUGACAUUUCUU
..............................................(((....((((......((((((.......))))))......))))..))).. ( -9.14 =  -9.58 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:50:25 2011