Locus 1496

Sequence ID dm3.chr2L
Location 11,552,002 – 11,552,093
Length 91
Max. P 0.820763
window2045

overview

Window 5

Location 11,552,002 – 11,552,093
Length 91
Sequences 6
Columns 94
Reading direction reverse
Mean pairwise identity 82.51
Shannon entropy 0.34101
G+C content 0.44837
Mean single sequence MFE -22.47
Consensus MFE -17.30
Energy contribution -17.58
Covariance contribution 0.28
Combinations/Pair 1.22
Mean z-score -1.48
Structure conservation index 0.77
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.80
SVM RNA-class probability 0.820763
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2L 11552002 91 - 23011544
CUUCAAUCAGUUGGCGCAUUGAAAGCUACUUUGUUUCUCGCAGGACCUUCCUGUUCC---GCCGUUGCUGUAAUUUGAUUGACUGUUUUCGGUA
..((((.(((((((((....((((((......)))).))(((((.....)))))..)---))))..))))....))))...((((....)))). ( -23.00, z-score =  -1.46, R)
>droAna3.scaffold_12916 9274677 78 + 16180835
CUUCAAUCAGCCGAGCAAUUGUAAGCU------CUUCUCGUCCGCCAUGCCGAC----------AUACAAUAAUGUGAUUGACUGUUUUCGGUA
...((((((...((((........)))------).....(((.((...)).)))----------...........))))))((((....)))). ( -17.10, z-score =  -1.09, R)
>droEre2.scaffold_4929 12787595 91 + 26641161
CUUCAAUCAGUCGGCGCAUUGAAUGCUACUUUGUUUCUCGCAGGAUCUUCCUGUUCC---GCCGAUGCUGUAAUUUGAUUGACUGUUUUCGGUA
...((((((((((((((((...)))).............(((((.....)))))...---)))))).........))))))((((....)))). ( -24.80, z-score =  -2.01, R)
>droYak2.chr2L 7978051 94 - 22324452
CUUCAAUCAGUCGGCACAUUGAAAGCUACUUUGUUUCUCGCAGGAUCUUCCUGUUCCGCCGUUUCUGCUGUAAUUUGAUUGACUGUUUUCGGUA
...(((((((.(((((....((((((......)))).))(((((.....)))))...........)))))....)))))))((((....)))). ( -22.70, z-score =  -1.68, R)
>droSec1.super_3 6942407 94 - 7220098
CUUCAAUCAGUCGGCGCAUUGAAAGCUACUUUGUUUCUCGCAGGACCUUCCUGUUUCGUUGCCGUUGCUGUAAUUUGAUUGACUGUUUUCGGUA
...(((((((.(((((((.(((((((......)))....(((((.....))))))))).)))....))))....)))))))((((....)))). ( -23.70, z-score =  -1.36, R)
>droSim1.chr2L 11362026 94 - 22036055
CUUCAAUCAGUCGGCGCAUUGAAAGCUACUUUGUUUCUCGCAGGACCUUCCUGUUCCGUUGCCGUUGCUGUAAUUUGAUUGACUGUUUUCGGUA
..((((.((((((((((...((((((......)))).))(((((.....)))))...).)))))..))))....))))...((((....)))). ( -23.50, z-score =  -1.27, R)
>consensus
CUUCAAUCAGUCGGCGCAUUGAAAGCUACUUUGUUUCUCGCAGGACCUUCCUGUUCC___GCCGUUGCUGUAAUUUGAUUGACUGUUUUCGGUA
...(((((((.((((.....((((((......)))).))((((((...))))))............))))....)))))))((((....)))). (-17.30 = -17.58 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:33:04 2011