| Sequence ID | dm3.chrX |
|---|---|
| Location | 16,660,946 – 16,661,042 |
| Length | 96 |
| Max. P | 0.559432 |
| Location | 16,660,946 – 16,661,042 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 60.21 |
| Shannon entropy | 0.62618 |
| G+C content | 0.61503 |
| Mean single sequence MFE | -34.78 |
| Consensus MFE | -10.83 |
| Energy contribution | -12.31 |
| Covariance contribution | 1.48 |
| Combinations/Pair | 1.43 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.31 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.559432 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 16660946 96 + 22422827 ----------AGAUCACACUCCGAUUGUGGCCCCAAUCAACAACUUGUCGCCGAGUGGGCG-GGGUGGCCAUCGCCAUCGCCAUCGCCACCGCCACCGCCCACAAUG-- ----------.((((.......)))).((((..(((........)))..)))).(((((((-(((((((.((.((....)).)).))))))....))))))))....-- ( -37.10, z-score = -2.22, R) >droSec1.super_17 489486 83 + 1527944 ----------AGAUCACACUUCCACUGUGGCCCCAAUCAACAACUUGUCGCCGAGUGGGCG-GGGUGGCCAUCGCCAUCGCC-------------CCGCCCACAAUA-- ----------.................((((..(((........)))..)))).(((((((-(((((((....)))...)))-------------))))))))....-- ( -35.30, z-score = -3.31, R) >droEre2.scaffold_4690 7018400 90 + 18748788 ----------AGAUCACACUCCGAUUGUGGCCCCAAUCAACAGCUUGUCGCCAAGUGGGCG-GGGUGGCCAUCGCCAUCGCCA------CCGCCACCGCCCACAAUG-- ----------.((((.......)))).((((..(((.(....).)))..)))).(((((((-(((((((....))))))((..------..))..))))))))....-- ( -35.30, z-score = -2.18, R) >droAna3.scaffold_13248 4282557 84 + 4840945 ----------AGAUCAGACUCGGACUCCGAGC--AAUUAA-GACCGCUUGCCGAGUGGGCG-GGGUCGUGGGUGUAGGCGUGA---------CCGCUGACCACAGUG-- ----------.((((.(.(((((...))))))--......-..(((((..(...)..))))-)))))((((.....((((...---------.))))..))))....-- ( -32.20, z-score = -0.86, R) >dp4.chrXL_group1a 6677010 96 + 9151740 UAUGGUAGCACCAUUAACCUCGCGCUGUGGACGCG-UCAACAG-UGGCAUCGAUGUGGCUGUGAGGCGUGGGCGUUGGCGAUG-----------ACCGCCUACAAUUUG .......((.((((...((((((((.......)))-)..((((-(.(((....))).))))))))).))))))((.((((...-----------..)))).))...... ( -34.00, z-score = -0.20, R) >consensus __________AGAUCACACUCCGACUGUGGCCCCAAUCAACAACUUGUCGCCGAGUGGGCG_GGGUGGCCAUCGCCAUCGCCA_________CCACCGCCCACAAUG__ ...........................((((..(((........)))..)))).(((((((.(((((((....))))))................))))))))...... (-10.83 = -12.31 + 1.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:50:22 2011