| Sequence ID | dm3.chrX |
|---|---|
| Location | 16,643,579 – 16,643,673 |
| Length | 94 |
| Max. P | 0.940727 |
| Location | 16,643,579 – 16,643,673 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 79.16 |
| Shannon entropy | 0.35364 |
| G+C content | 0.57445 |
| Mean single sequence MFE | -17.48 |
| Consensus MFE | -13.82 |
| Energy contribution | -13.82 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.79 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.47 |
| SVM RNA-class probability | 0.940727 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 16643579 94 + 22422827 UUUGGGUGCGAUGAUAACCUUGUCGCACCAAACCCCCCAAGCCACCAAACCCCCAGUCCACACCUUCCACCCACCGACCAUCGCAAUCAGUUGU ....(((((((..(.....)..))))))).....................................................((((....)))) ( -15.00, z-score = -0.68, R) >droSim1.chrX 12824968 91 + 17042790 UUUGGGUGCGAUGAUAACCUUGUCGCACCUCCCCC---AAGCCCACUAGCCCCCAGUCGCCACCUUCCACCCACCGACCAUCGCAAUCAGUUGU ...((((((((..(.....)..)))))))).....---..........((.....((((...............))))....)).......... ( -18.06, z-score = -1.23, R) >droSec1.super_237 2871 92 + 20842 UUUGGGUGCGAUGAUAACCUUGUCGCACCUCCCCCC--AAGCCCACUAGCCCCCAGUCGCCACCUUCCACCCACCGACCAUCGGAAUCAGUUGU ...((((((((..(.....)..))))))))....((--..((......)).....((((...............))))....)).......... ( -18.76, z-score = -0.70, R) >droYak2.chrX 15249152 73 + 21770863 UUUGGGUGCGAUGAUAACCUUGUCGCACC---------------------CCCCUCUUAACCCCUUCCACCCACCGCCCAUCGCAAUCAGUUGU ...((((((((..(.....)..)))))))---------------------)........................((.....)).......... ( -17.80, z-score = -3.15, R) >droEre2.scaffold_4690 7001277 72 + 18748788 UUUGGGUGCGAUGAUAACCUUGUCGCACC---------------------CCCCAUAUA-CCCCUUCCACCCACCGCCCAUCGCAAUCAGUUGU ...((((((((..(.....)..)))))))---------------------)........-...............((.....)).......... ( -17.80, z-score = -2.98, R) >consensus UUUGGGUGCGAUGAUAACCUUGUCGCACC___CCC___AAGCC__C_A_CCCCCAGUCAACACCUUCCACCCACCGACCAUCGCAAUCAGUUGU ....(((((((..(.....)..)))))))................................................................. (-13.82 = -13.82 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:50:21 2011