| Sequence ID | dm3.chrX |
|---|---|
| Location | 16,588,065 – 16,588,115 |
| Length | 50 |
| Max. P | 0.724908 |
| Location | 16,588,065 – 16,588,115 |
|---|---|
| Length | 50 |
| Sequences | 9 |
| Columns | 56 |
| Reading direction | reverse |
| Mean pairwise identity | 72.23 |
| Shannon entropy | 0.54386 |
| G+C content | 0.45011 |
| Mean single sequence MFE | -8.79 |
| Consensus MFE | -4.73 |
| Energy contribution | -4.56 |
| Covariance contribution | -0.17 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.12 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.724908 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 16588065 50 - 22422827 ---AUUGAGGCGGUUAAAUGCCGACCACCCAUUUACCCCAAACGUAAGUAAAA--- ---.....((((((.....)))).))....((((((.......))))))....--- ( -10.10, z-score = -1.54, R) >droEre2.scaffold_4690 6946513 50 - 18748788 ---AUUGAAGCGGUUAAAUGCCGACCACCCAUUUACCCCAAACGUAAGUAAAU--- ---.......((((.....)))).......((((((.......))))))....--- ( -6.60, z-score = -1.15, R) >droYak2.chrX 15191232 50 - 21770863 ---AUUGAGGCGGUUAAAUGCCGACCACCCAUUUACCCCAAACGUAAGUAAAU--- ---.....((((((.....)))).))....((((((.......))))))....--- ( -10.10, z-score = -1.68, R) >droSim1.chrX 12782468 50 - 17042790 ---AUUGAGGCGGUUAAAUGCCGACCACCCAUUUACCCCAAACGUAAGUAAAU--- ---.....((((((.....)))).))....((((((.......))))))....--- ( -10.10, z-score = -1.68, R) >dp4.chrXL_group1e 2790976 53 - 12523060 ---UUUGAGGCAGGAAAAUGUCGUCCACCCCUCUACCCAAAACGUGAGUAAAUCGG ---...((((..(((........)))...))))........((....))....... ( -9.40, z-score = -0.17, R) >droPer1.super_18 1688117 53 - 1952607 ---UUUGAGGCAGGAAAAUGUCGCCCACCCCUCUACCCAAAACGUGAGUAAAUCCC ---...((((..((..........))...))))........((....))....... ( -7.30, z-score = -0.13, R) >droWil1.scaffold_181096 2934079 50 + 12416693 ---GGUGAGACAUCAAAAUGUCGACCAGUUUUAUAUCCAAAACGUAAGUAAAA--- ---(((..(((((....))))).))).(((((......)))))..........--- ( -9.70, z-score = -2.49, R) >droMoj3.scaffold_6308 2416251 50 - 3356042 ---GCAGAGACAGCAAAGAGUCGCCCGCCUCUCUAUCCGAAACGUAAGUAGAA--- ---((.......))..((((..(....)..)))).......((....))....--- ( -6.00, z-score = 0.57, R) >droGri2.scaffold_14853 5132127 51 - 10151454 GUUGAGGCGACUUCCAAGUCUCGUCCAGCUCUAUAUCCAAAACGUAAGUAA----- ((((.(((((((....))))..)))))))............((....))..----- ( -9.80, z-score = -1.77, R) >consensus ___AUUGAGGCAGUAAAAUGUCGACCACCCAUUUACCCAAAACGUAAGUAAAU___ ........((((......))))...................((....))....... ( -4.73 = -4.56 + -0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:50:17 2011