| Sequence ID | dm3.chrX |
|---|---|
| Location | 16,549,565 – 16,549,666 |
| Length | 101 |
| Max. P | 0.967988 |
| Location | 16,549,565 – 16,549,666 |
|---|---|
| Length | 101 |
| Sequences | 5 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 89.02 |
| Shannon entropy | 0.18724 |
| G+C content | 0.40586 |
| Mean single sequence MFE | -23.12 |
| Consensus MFE | -21.60 |
| Energy contribution | -20.64 |
| Covariance contribution | -0.96 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.93 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.79 |
| SVM RNA-class probability | 0.967988 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 16549565 101 - 22422827 CCGUUACAACUACAGCUCACUUACGAUU-------CCGUGUACUUUCAAGCGAAGCUCUCUCUUUGCUGCACUUGUAGUUGUGAACACGUUUUGGUUUCGACUUUAAU ...(((((((((((((.....((((...-------.))))........(((((((......)))))))))...)))))))))))....(((..(((....)))..))) ( -23.00, z-score = -1.33, R) >droSim1.chrX 12728029 101 - 17042790 CCAUUACAACUACAACUCACUUGCGAUU-------CCGUGUACUUUCAAGCGAAGCUCUCUCUUUGCUGCACUUGUAGUUGUGAACACGUUUUGGUUUCGACUAAAAU ...((((((((((((.......(((...-------.))).........(((((((......)))))))....))))))))))))....((((((((....)))))))) ( -26.50, z-score = -2.99, R) >droSec1.super_17 372393 101 - 1527944 CCAUUACAACUACAACUCACUUGCGAUU-------CCGUGUACUUUCAAGCGAAGCUCUCUCUUUGCUGCACUUGUAGUUGUGAACACGUUUUGGUUUCGACUAAAAU ...((((((((((((.......(((...-------.))).........(((((((......)))))))....))))))))))))....((((((((....)))))))) ( -26.50, z-score = -2.99, R) >droYak2.chrX 10656484 107 - 21770863 ACAUUACAAUUACAACACACUUACGAUUCCU-AUGCCGUAUACUUUCAAGCAAAGCUCUCUCUUUGCUGCACUUGUAGUUGUGAACACGUUUUAGUUUUGACUCAAAU ...((((((((((((......((((......-....))))........(((((((......)))))))....))))))))))))....((((.(((....))).)))) ( -20.90, z-score = -2.08, R) >droEre2.scaffold_4690 6908111 108 - 18748788 ACAUUACAAUUUCAACACACUUACGAUUCCCGAUUCCGUGAACUUUCAAGCGAAGCUCUCUCUUUGCUGCACUUGUAGUUGUGAACACGUUUUAGUUUCGACUCAAAC ...............((((.(((((((((.((....)).)))......(((((((......)))))))....)))))).)))).....((((.(((....))).)))) ( -18.70, z-score = -0.51, R) >consensus CCAUUACAACUACAACUCACUUACGAUU_______CCGUGUACUUUCAAGCGAAGCUCUCUCUUUGCUGCACUUGUAGUUGUGAACACGUUUUGGUUUCGACUAAAAU ...((((((((((((......((((...........))))........(((((((......)))))))....))))))))))))....((((.(((....))).)))) (-21.60 = -20.64 + -0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:50:11 2011