| Sequence ID | dm3.chrX |
|---|---|
| Location | 16,534,855 – 16,534,962 |
| Length | 107 |
| Max. P | 0.954342 |
| Location | 16,534,855 – 16,534,962 |
|---|---|
| Length | 107 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 80.95 |
| Shannon entropy | 0.31292 |
| G+C content | 0.56020 |
| Mean single sequence MFE | -37.92 |
| Consensus MFE | -28.78 |
| Energy contribution | -29.66 |
| Covariance contribution | 0.88 |
| Combinations/Pair | 1.29 |
| Mean z-score | -2.10 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.60 |
| SVM RNA-class probability | 0.954342 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 16534855 107 - 22422827 ----GGCGAGUGUGACCCUGUGCGAUGCCGAAAUACCUGUAGCCGGGGUCACACU-GCAGCGCAGAUCUGCGCUAACCACAAAAUAG-CCUUUUCACACGGCCGCUACAAGUC------- ----((((((((((((((((.((..(((.(......).)))))))))))))))))-..((((((....))))))............(-((.........))))))).......------- ( -41.50, z-score = -2.90, R) >droSim1.chrX 12713410 109 - 17042790 ----GGCGAGUGUGACCUGCGGGAACGGCGAAAUACUUGCAGCCGGGGUCACACUGGCAGCGCAGAUCUGCGCCAACCACAAAAUAGCCCUUUUCACACGGCCGCUUCAAAAC------- ----((((((((((((((.(((.....((((.....))))..)))))))))))))((..(((((....)))))...))........(((..........))))))).......------- ( -38.70, z-score = -1.44, R) >droSec1.super_17 357541 111 - 1527944 GGCGGGCGAGUGUGACCCUGUGCGACGGCGAAAUACCCGCAGCUGGGGUCACACU-GCAGCGCAGAUCUGCGCCAACCACAAAAUAG-CCUUUUCACACGGCCGCUUCAAAAC------- (((((.((((((((((((((.((..(((........)))..))))))))))))))-...(((((....)))))..............-..........)).))))).......------- ( -47.40, z-score = -3.17, R) >droYak2.chrX 10641493 113 - 21770863 ----GGCGAGUGUGACCCGGUGCGAUUUCGAAAUGCCUGCAGAUAGGGUCACACU-GCAGUGCAGAUCUACGCCAACUAC-AAAUAC-CUUUUUCACACAGCCGCUUCAAGUCCCAAUAA ----(((..((((((...((((.(....)((..(((((((((....(....).))-)))).)))..))............-...)))-)....)))))).)))................. ( -29.50, z-score = -0.66, R) >droEre2.scaffold_4690 6893287 112 - 18748788 ----GGCGAGUGUGACCCUCACCGACUCCGAAAUACCUGUAGAUAGGGUCACACU-GCAGCGCAGAUCUGCGCCAACUAC-AAAUGC-CCUUUUCACACAGCCGCUUCAAGUCAC-CUAA ----(((.(((((((((((.....((............))....)))))))))))-...(((((....))))).......-......-............)))............-.... ( -32.50, z-score = -2.32, R) >consensus ____GGCGAGUGUGACCCUGUGCGACGCCGAAAUACCUGCAGCUGGGGUCACACU_GCAGCGCAGAUCUGCGCCAACCACAAAAUAG_CCUUUUCACACGGCCGCUUCAAGUC_______ ....(((.((((((((((((((((.............))))..))))))))))))....(((((....)))))...........................)))................. (-28.78 = -29.66 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:50:10 2011