| Sequence ID | dm3.chr2L |
|---|---|
| Location | 11,538,280 – 11,538,372 |
| Length | 92 |
| Max. P | 0.956093 |
| Location | 11,538,280 – 11,538,372 |
|---|---|
| Length | 92 |
| Sequences | 7 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 75.27 |
| Shannon entropy | 0.46043 |
| G+C content | 0.58226 |
| Mean single sequence MFE | -35.60 |
| Consensus MFE | -22.60 |
| Energy contribution | -25.30 |
| Covariance contribution | 2.70 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.63 |
| SVM RNA-class probability | 0.956093 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 11538280 92 + 23011544 UGCCGUGGCCUGGCUGCAACUUGACCCCGGGUCAAAUGCAACAAGAUGCGGUACCU-CGAGUGGUGCUGUAACGGUUGCUGCUGCCGCUGUUC------------ .((.(((((..(((.(((((((((((...)))))..........(.(((((((((.-.....))))))))).))))))).)))))))).))..------------ ( -38.50, z-score = -2.21, R) >droSim1.chr2L 11355795 92 + 22036055 UGCCGUGGCCUGGCUGCAACUUGACCCCGGGUCAAAUGCAACAAGAUGCGGUACCU-CGAGUGGUGCUGUAACGGUUGCUGCUGCCGCUGUUC------------ .((.(((((..(((.(((((((((((...)))))..........(.(((((((((.-.....))))))))).))))))).)))))))).))..------------ ( -38.50, z-score = -2.21, R) >droSec1.super_3 6936151 92 + 7220098 UGCCGUGGCCUGGCUGCAACUUGACCCCGGGUCAAAUGCAACAAGAUGCGGUACCU-CGAGUGGUGCUGUAACGGUUGCUGCUGUCGCUGUUC------------ .((.(((((..(((.(((((((((((...)))))..........(.(((((((((.-.....))))))))).))))))).)))))))).))..------------ ( -35.80, z-score = -1.64, R) >droYak2.chr2L 7970565 89 + 22324452 ---UGUGCCGUGGCUGCAACUUGACCCCGGGUCAAAUGCAACAAGAUGCGGUACCU-CGAGUGGUGCUGUAACGGUUGCUGCUGCCGCUGUUC------------ ---...((.(((((.(((..((((((...))))))..(((((....(((((((((.-.....)))))))))...)))))))).))))).))..------------ ( -39.10, z-score = -3.15, R) >droEre2.scaffold_4929 12781345 89 - 26641161 ---CGUGGCCUGGCUGCAACUUGACCCCGGGUCAAAUGCAACAAGAUGCGGUACCU-CGAGUGGUGCUGUAACGGUUGCUGCUGCCGCUGUUC------------ ---.(((((..(((.(((((((((((...)))))..........(.(((((((((.-.....))))))))).))))))).)))))))).....------------ ( -38.10, z-score = -2.63, R) >droGri2.scaffold_15252 9366772 83 + 17193109 UGCUGUGGCU--GCUGCAACUUGACCUCAGGUCAAAUGCAACAAGAUGGGGCACAUGUUCGUGUCUCUGUUUGGG--GCUGCUGUUG------------------ .((.(..(((--..((((..((((((...)))))).)))).((((..(((((((......)))))))..)))).)--))..).))..------------------ ( -28.90, z-score = -1.31, R) >droMoj3.scaffold_6500 25207683 96 + 32352404 ---------GCUGCUGCAACUUGACCUCGGGUCAAAUGCAACAAGAUGGGUCAACAUGGCUCGUACCCGCCGCCGUGUCGUGGUCCGUGGUUCGUGUGGAUGUUG ---------.(..(((((..((((((...)))))).)))).....((((..(((((((((.((....))..)))))))..))..)))).......)..)...... ( -30.30, z-score = 0.53, R) >consensus UGCCGUGGCCUGGCUGCAACUUGACCCCGGGUCAAAUGCAACAAGAUGCGGUACCU_CGAGUGGUGCUGUAACGGUUGCUGCUGCCGCUGUUC____________ ....(((((..(((.(((((((((((...))))))...........(((((((((.......)))))))))...))))).))))))))................. (-22.60 = -25.30 + 2.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:33:03 2011