| Sequence ID | dm3.chrX |
|---|---|
| Location | 16,530,618 – 16,530,723 |
| Length | 105 |
| Max. P | 0.924592 |
| Location | 16,530,618 – 16,530,723 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 72.56 |
| Shannon entropy | 0.50911 |
| G+C content | 0.58404 |
| Mean single sequence MFE | -25.53 |
| Consensus MFE | -16.04 |
| Energy contribution | -16.15 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.38 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.31 |
| SVM RNA-class probability | 0.924592 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 16530618 105 - 22422827 GCUGCGUCCGCAUGUGGCG---UUGGCGGCACUCCACCAAAAGAAGCCAGCGCCAAGUGCCCAA--UCCCCAUACCCAUACCCAUUCCCAUUCCCAUCCCCAUCCGUAUU .........((((.(((((---(((((..(............)..)))))))))).))))....--............................................ ( -24.70, z-score = -2.16, R) >droSim1.chrX 12709063 95 - 17042790 GCUGCGUCCGCAUGUGGCG---UUGGCGGCACUCCACCAAAAGAAGCCAUCGCCAAGUGCCCAAGUGCCCAAUCCCCAUUCCCAUACCCAUCCGUAUU------------ ((.((....((((.(((((---.((((..(............)..)))).))))).))))....))))..............................------------ ( -22.60, z-score = -0.76, R) >droSec1.super_17 353262 107 - 1527944 GCUGCGUCCGCAUGUGGCG---UUGGCGGCACUCCACCAAAAGAAGCCAGCGCCAAGUGCCCAAGUGCCCAAUCCCCAUACCCAUUCCCAUUCCCAUACCCAUCCGUAUU ((.((....((((.(((((---(((((..(............)..)))))))))).))))....)))).......................................... ( -26.70, z-score = -1.97, R) >droYak2.chrX 10637335 99 - 21770863 GCUGCGUCCGCAUGUGGCG---UUGGCGGCACUCCACCAAAAGAAGCCAGCGCCAAGUGCCCAA--UCCCCAUUCCCAUACCCAUCCACGUCCCUAUCCGCAUU------ ..((((...((((.(((((---(((((..(............)..)))))))))).))))....--.............((........)).......))))..------ ( -26.40, z-score = -2.01, R) >droEre2.scaffold_4690 6889311 102 - 18748788 ACUGCGUCCGCAUGUGGCGGCAUUGGCGGCACACCACCAAAAGAAGCCAGUGCCAAGUGCCCAA--UCUCCAUUCCCAUCCCCAUUCCCGUCCCUAUCCGUAUU------ ..(((....)))((.((((((((((((((....))..(....)..)))))))))....))))).--......................................------ ( -22.40, z-score = -0.14, R) >droMoj3.scaffold_6308 2701089 98 + 3356042 UCUCUGCCCGCAUGUGGCG---UUGGCUAC-CGACGGCUGUCGAAGCUGUCGCUUAG-GCAUUUGCAUCUGCUACUCCUUCGCAGAC-CAUUUGAAUCCUCAAG------ ..(((((......((((((---...((...-.(((((((.....)))))))((....-))....))...))))))......))))).-...((((....)))).------ ( -30.40, z-score = -1.27, R) >consensus GCUGCGUCCGCAUGUGGCG___UUGGCGGCACUCCACCAAAAGAAGCCAGCGCCAAGUGCCCAA__UCCCCAUACCCAUACCCAUUCCCAUCCCUAUCCCCAUC______ .........((((.(((((...(((((..................)))))))))).)))).................................................. (-16.04 = -16.15 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:50:09 2011