| Sequence ID | dm3.chrX |
|---|---|
| Location | 16,515,056 – 16,515,107 |
| Length | 51 |
| Max. P | 0.800716 |
| Location | 16,515,056 – 16,515,107 |
|---|---|
| Length | 51 |
| Sequences | 3 |
| Columns | 52 |
| Reading direction | forward |
| Mean pairwise identity | 94.87 |
| Shannon entropy | 0.07064 |
| G+C content | 0.36765 |
| Mean single sequence MFE | -10.13 |
| Consensus MFE | -9.60 |
| Energy contribution | -9.93 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.95 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.73 |
| SVM RNA-class probability | 0.800716 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 16515056 51 + 22422827 UGCAUUUCGACGGUUGGCAACUAAGUUGGGAUUUCGAAAAUUAAAU-AUAUG ...((..((((....(....)...))))..))..............-..... ( -7.80, z-score = -0.85, R) >droSim1.chrX 12695378 52 + 17042790 UGCAUUUCGACGCUUGGCAACUAAGUUGGGAUUUCGAAAAUUGAGUUAUAUG ....((((((..((..((......))..))...))))))............. ( -11.30, z-score = -1.61, R) >droSec1.super_17 337967 52 + 1527944 UGCAUUUCGACGCUUGGCAACUAAGUUGGGAUUUCGAAAAUUAAGUUAUAUG ....((((((..((..((......))..))...))))))............. ( -11.30, z-score = -1.93, R) >consensus UGCAUUUCGACGCUUGGCAACUAAGUUGGGAUUUCGAAAAUUAAGUUAUAUG ....((((((..((..((......))..))...))))))............. ( -9.60 = -9.93 + 0.33)
| Location | 16,515,056 – 16,515,107 |
|---|---|
| Length | 51 |
| Sequences | 3 |
| Columns | 52 |
| Reading direction | reverse |
| Mean pairwise identity | 94.87 |
| Shannon entropy | 0.07064 |
| G+C content | 0.36765 |
| Mean single sequence MFE | -5.50 |
| Consensus MFE | -5.50 |
| Energy contribution | -5.50 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -0.90 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.676752 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 16515056 51 - 22422827 CAUAU-AUUUAAUUUUCGAAAUCCCAACUUAGUUGCCAACCGUCGAAAUGCA .....-.......((((((.....((((...)))).......)))))).... ( -5.50, z-score = -1.33, R) >droSim1.chrX 12695378 52 - 17042790 CAUAUAACUCAAUUUUCGAAAUCCCAACUUAGUUGCCAAGCGUCGAAAUGCA .............((((((.....((((...)))).......)))))).... ( -5.50, z-score = -0.69, R) >droSec1.super_17 337967 52 - 1527944 CAUAUAACUUAAUUUUCGAAAUCCCAACUUAGUUGCCAAGCGUCGAAAUGCA .............((((((.....((((...)))).......)))))).... ( -5.50, z-score = -0.68, R) >consensus CAUAUAACUUAAUUUUCGAAAUCCCAACUUAGUUGCCAAGCGUCGAAAUGCA .............((((((.....((((...)))).......)))))).... ( -5.50 = -5.50 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:50:08 2011